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{"type":"tool_use","timestamp":1777303015477,"sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","part":{"id":"prt_dcf83c7af001EJbtlRWYSW1Bal","messageID":"msg_dcf83ba42001hQx5jXiG1dZ62p","sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","type":"tool","tool":"read","callID":"call_00_E5MfNCk4B98QNeeKWYmZntVe","state":{"status":"completed","input":{"filePath":"/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/tasks.md"},"output":"<path>/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/tasks.md</path>\n<type>file</type>\n<content>\n1: ---\n2: # SPECKIT_TEMPLATE_SOURCE: tasks-core | v2.2\n3: title: \"Tasks: /memory:search Runtime Remediation [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/tasks]\"\n4: description: \"Per-defect work units for /memory:search runtime remediation, organized by root-cause cluster. Findings-packet tasks completed; remediation tasks deferred to follow-up packet.\"\n5: trigger_phrases:\n6:   - \"memory search remediation tasks\"\n7:   - \"memory_context truncation fix\"\n8:   - \"intent classifier fallback fix\"\n9: importance_tier: \"important\"\n10: contextType: \"implementation\"\n11: _memory:\n12:   continuity:\n13:     packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n14:     last_updated_at: \"2026-04-26T14:33:00Z\"\n15:     last_updated_by: \"claude-opus-4-7\"\n16:     recent_action: \"Decomposed remediation plan into Phase 1-3 work units\"\n17:     next_safe_action: \"Hand off to remediation packet\"\n18:     blockers: []\n19:     key_files:\n20:       - \"spec.md\"\n21:       - \"plan.md\"\n22:       - \"tasks.md\"\n23:     completion_pct: 75\n24:     open_questions: []\n25:     answered_questions: []\n26: template_source_hint: \"<!-- SPECKIT_TEMPLATE_SOURCE: tasks-core | v2.2 -->\"\n27: ---\n28: # Tasks: /memory:search Runtime Remediation\n29: \n30: <!-- SPECKIT_LEVEL: 1 -->\n31: <!-- SPECKIT_TEMPLATE_SOURCE: tasks-core | v2.2 -->\n32: \n33: ---\n34: \n35: <!-- ANCHOR:notation -->\n36: ## Task Notation\n37: \n38: | Prefix | Meaning |\n39: |--------|---------|\n40: | `[ ]` | Pending |\n41: | `[x]` | Completed |\n42: | `[P]` | Parallelizable |\n43: | `[B]` | Blocked |\n44: \n45: **Task Format**: `T### [P?] Description (file path)`\n46: \n47: This packet is findings-only. Phase 1 (this packet) is complete; Phase 2 and Phase 3 are deferred to a follow-up remediation packet.\n48: <!-- /ANCHOR:notation -->\n49: \n50: ---\n51: \n52: <!-- ANCHOR:phase-1 -->\n53: ## Phase 1: Setup\n54: \n55: This packet (Phase 1) authors the findings; downstream phases are executed by the follow-up remediation packet.\n56: \n57: - [x] T001 Reproduce defects via live MCP probes (spec §8)\n58: - [x] T002 Author spec.md with all 17 defects mapped to REQ-001..017 (spec.md)\n59: - [x] T003 [P] Author plan.md with 7 root-cause clusters (plan.md)\n60: - [x] T004 [P] Author tasks.md decomposing remediation work (tasks.md — this file)\n61: - [x] T005 [P] Author implementation-summary.md placeholder (implementation-summary.md)\n62: - [x] T006 [P] Generate description.json (description.json)\n63: - [x] T007 [P] Generate graph-metadata.json (graph-metadata.json)\n64: - [ ] T008 Pass `bash .opencode/skills/system-spec-kit/scripts/spec/validate.sh <this-folder> --strict`\n65: <!-- /ANCHOR:phase-1 -->\n66: \n67: ---\n68: \n69: <!-- ANCHOR:phase-2 -->\n70: ## Phase 2: Implementation\n71: \n72: Deferred to the follow-up remediation packet.\n73: \n74: ### Cluster 1 — Truncation Wrapper (P0; REQ-002)\n75: - [x] T101 Locate memory_context budget enforcement code (`mcp_server/handlers/memory-context.ts:447` — `enforceTokenBudget`)\n76: - [x] T102 Instrument per-result token estimation; log estimated vs actual for 10 sample queries — diagnosed via inline `node` probe; bug was the `fallbackToStructuredBudget()` zero-fill, not estimator inflation\n77: - [x] T103 Identify whether `data.content` stub-replacement is unconditional or conditional — confirmed unconditional zero-fill at original `mcp_server/handlers/memory-context.ts:482` `fallbackToStructuredBudget`; preserves none of the structurally-truncated survivors\n78: - [x] T104 Fix: when `actualTokens / budgetTokens < 0.50`, return all results unmodified (`mcp_server/handlers/memory-context.ts:467-481` early-return guard) PLUS preserve survivors via the new `preservedAfterStructural` snapshot fed into `fallbackToStructuredBudget()` (`mcp_server/handlers/memory-context.ts:472-545, 696-705, 766-797`)\n79: - [x] T105 [P] Regression test: existing T205-B suite still passes; inline node probe confirms `count > 0` after fix and metadata `returnedResultCount` matches actual payload `results.length`\n80: \n81: ### Cluster 2 — Intent Classifier Drift (P0/P1; REQ-001, REQ-004, REQ-016)\n82: - [x] T201 Locate intent detection code (`mcp_server/lib/search/intent-classifier.ts:404` `classifyIntent`); confirmed `meta.intent` (this classifier) and `data.queryIntentRouting` (`mcp_server/code_graph/lib/query-intent-classifier.ts`) are SEPARATE scorers serving different purposes\n83: - [x] T202 Added centroid-only confidence floor at 0.30 per spec §4A — keeps existing P3-12 0.08 floor for keyword-driven scoring, escalates to 0.30 only when keyword + pattern evidence is empty (`mcp_server/lib/search/intent-classifier.ts:209` constant + `:484-505` gate). Avoids breaking 15 existing intent-corpus tests that depend on single-keyword classification.\n84: - [x] T203 [P] Documented authority split: `meta.intent.classificationKind = \"task-intent\"` is authoritative for rendering / anchors / mode-routing; `data.queryIntentRouting.classificationKind = \"backend-routing\"` is authoritative only for channel selection (`mcp_server/handlers/memory-context.ts:1180-1191, 1576-1583`)\n85: - [ ] T204 Add stability corpus: 20 paraphrased queries — DEFERRED (out of scope for P0 fixes; corpus exists informally via the 80% accuracy test at intent-classifier.vitest.ts:T060)\n86: - [x] T205 [P] Regression test verified inline: \"Semantic Search\" → understand (was fix_bug 0.098); \"Find stuff related to semantic search\" → understand; \"fix the login bug\" → fix_bug (single-keyword regression-safe)\n87: \n88: ### Cluster 3 — Output Rendering Vocabulary (P0; REQ-003)\n89: - [x] T301 Decided option (b): stronger spec enforcement with literal forbidden-phrase list (option (a) blocked — assistant emits the rendering, not the runtime)\n90: - [ ] T302 If (a): build canonical formatter — N/A, see T301\n91: - [x] T303 Added \"Forbidden Phrase Enforcement (REQ-003 / Cluster 3)\" subsection to `.opencode/commands/memory/search.md` with full forbidden→required substitution table, mandatory pre-render gate steps, and a verification grep\n92: - [x] T304 [P] Verification grep specified in spec: `grep -Eci 'auto-triggered|triggered memories|triggered memory|constitutional memor(y|ies)'` MUST return 0 against the rendered block\n93: \n94: ### Cluster 4 — Causal-Stats Output Hygiene (P1; REQ-005, REQ-006, REQ-013)\n95: - [ ] T401 Update memory_causal_stats serializer to emit all 6 relation keys (zero-fill if absent)\n96: - [ ] T402 [P] Reconcile health field with meetsTarget; document mapping in spec §5B\n97: - [ ] T403 [P] Add remediation hint when meetsTarget=false\n98: - [ ] T404 Regression test: response shape contains all 6 relations; health agrees with meetsTarget\n99: \n100: ### Cluster 5 — State Hygiene (P1; REQ-009, REQ-011, REQ-015)\n101: - [ ] T501 Thread stable sessionId through `/memory:search` invocations within an OpenCode session\n102: - [ ] T502 [P] Guard \"Context quality is degraded\" hint emission on fresh ephemeral\n103: - [ ] T503 [P] Extend dedup to trigger and constitutional channels\n104: - [ ] T504 Regression test: two consecutive `/memory:search` calls in same session share session ID; second call dedupes prior triggers\n105: \n106: ### Cluster 6 — Folder Discovery + Channel Health (P1/P2; REQ-008, REQ-012, REQ-017)\n107: - [ ] T601 Raise folder-discovery similarity threshold; require minimum signal strength before binding\n108: - [ ] T602 [P] Add CocoIndex daemon health check at `/memory:search` invocation start\n109: - [ ] T603 [P] Emit explicit `WARN: vector channel unavailable` line when daemon down\n110: - [ ] T604 [P] Disambiguate \"code graph\" vs \"causal graph\" naming in startup hook + causal-stats output\n111: - [ ] T605 Regression test: \"Semantic Search\" → `folderDiscovery=null`; daemon-down probe shows warning\n112: \n113: ### Cluster 7 — Quality Fallback + Edge Growth (P1/P2; REQ-007, REQ-010, REQ-014)\n114: - [ ] T701 Wire 3-tier FTS fallback (FTS5 → BM25 → Grep) to trigger automatically when quality=gap\n115: - [ ] T702 [P] Investigate causal-backfill job; identify why only `supersedes` edges added\n116: - [ ] T703 Extend backfill to surface `caused` and `supports` candidates with confidence scores\n117: - [ ] T704 [P] Document AskUserQuestion custom-answer routing in spec §4 OR add \"Code search\" menu option\n118: - [ ] T705 Regression test: weak query triggers fallback; output includes `fallback_tier` field\n119: <!-- /ANCHOR:phase-2 -->\n120: \n121: ---\n122: \n123: <!-- ANCHOR:phase-3 -->\n124: ## Phase 3: Verification\n125: \n126: Deferred to the follow-up remediation packet.\n127: \n128: - [ ] T901 Re-run spec §8 Probe 1 (intent classifier); confirm \"Semantic Search\" → `understand`\n129: - [ ] T902 Re-run spec §8 Probe 2 (truncation); confirm `count > 0` in `data.content` at low token utilization\n130: - [ ] T903 Re-run spec §8 Probe 3 (causal-stats); confirm all 6 relations present + health agrees with meetsTarget\n131: - [ ] T904 Re-run spec §8 Probe 4 (folder discovery); confirm no spurious binding\n132: - [ ] T905 Re-run spec §8 Probe 5 (edge growth); confirm non-`supersedes` relation deltas\n133: - [ ] T906 Verify rendering vocabulary on empty-result `/memory:search` invocation\n134: - [ ] T907 Update spec.md §8 with post-fix probe outputs alongside the original evidence\n135: - [ ] T908 Mark all REQ-001..017 acceptance criteria as PASSED in checklist or implementation-summary\n136: <!-- /ANCHOR:phase-3 -->\n137: \n138: ---\n139: \n140: <!-- ANCHOR:completion -->\n141: ## Completion Criteria\n142: \n143: This packet (Phase 1) completes when:\n144: - [x] All Phase 1 tasks T001-T007 marked `[x]`\n145: - [ ] T008 (validation) passes\n146: - [ ] No `[B]` blocked tasks remaining in Phase 1\n147: - [ ] Memory indexer surfaces this packet via `memory_search \"memory search runtime bugs\"`\n148: \n149: The follow-up remediation packet completes when all Phase 2 + Phase 3 tasks are `[x]` and the spec §8 probes pass per their acceptance criteria.\n150: <!-- /ANCHOR:completion -->\n151: \n152: ---\n153: \n154: <!-- ANCHOR:cross-refs -->\n155: ## Cross-References\n156: \n157: - **Specification**: See `spec.md` (REQ-001..017 with acceptance criteria + probe evidence in §8)\n158: - **Plan**: See `plan.md` (7 root-cause clusters + phase sequencing)\n159: - **Implementation Summary**: See `implementation-summary.md`\n160: - **Canonical command spec**: `.opencode/commands/memory/search.md`\n161: - **Sibling packets**:\n162:   - `../001-cache-warning-hooks/` — token-budget hook patterns\n163:   - `../002-memory-quality-remediation/` — prior backend repair history\n164:   - `../003-continuity-refactor-gates/` — gates A-F coordination\n165:   - `../004-memory-save-rewrite/` — planner-first save contract\n166: - **Related work outside parent**: `../../005-memory-indexer-invariants/`\n167: <!-- /ANCHOR:cross-refs -->\n\n(End of file - total 167 lines)\n</content>","metadata":{"preview":"---\n# SPECKIT_TEMPLATE_SOURCE: tasks-core | v2.2\ntitle: \"Tasks: /memory:search Runtime Remediation [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/tasks]\"\ndescription: \"Per-defect work units for /memory:search runtime remediation, organized by root-cause cluster. Findings-packet tasks completed; remediation tasks deferred to follow-up packet.\"\ntrigger_phrases:\n  - \"memory search remediation tasks\"\n  - \"memory_context truncation fix\"\n  - \"intent classifier fallback fix\"\nimportance_tier: \"important\"\ncontextType: \"implementation\"\n_memory:\n  continuity:\n    packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n    last_updated_at: \"2026-04-26T14:33:00Z\"\n    last_updated_by: \"claude-opus-4-7\"\n    recent_action: \"Decomposed remediation plan into Phase 1-3 work units\"\n    next_safe_action: \"Hand off to remediation packet\"\n    blockers: []\n    key_files:\n      - \"spec.md\"","truncated":false,"loaded":[]},"title":".opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/tasks.md","time":{"start":1777303015471,"end":1777303015476}}}}
{"type":"tool_use","timestamp":1777303017916,"sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","part":{"id":"prt_dcf83d13d001Xw2XBNJ6wKAKJ0","messageID":"msg_dcf83ba42001hQx5jXiG1dZ62p","sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","type":"tool","tool":"read","callID":"call_01_bqrEJlx4F6oXk2ejengykFPy","state":{"status":"completed","input":{"filePath":"/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/spec.md"},"output":"<path>/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/spec.md</path>\n<type>file</type>\n<content>\n1: ---\n2: # SPECKIT_TEMPLATE_SOURCE: spec-core | v2.2\n3: title: \"Feature Specification [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/spec]\"\n4: description: \"Findings spec cataloging /memory:search runtime bugs and refinements observed via live conversation + reproduction probes (intent classifier, truncation wrapper, output rendering, causal-stats hygiene).\"\n5: trigger_phrases:\n6:   - \"005-memory-search-runtime-bugs\"\n7:   - \"memory search runtime bugs\"\n8:   - \"memory_context truncation drops results\"\n9:   - \"intent classifier dual-source dissonance\"\n10:   - \"auto-triggered vocabulary violation\"\n11:   - \"causal-stats relation omission\"\n12:   - \"ephemeral session dedup\"\n13:   - \"folder-discovery misfire\"\n14:   - \"context quality degraded false hint\"\n15: importance_tier: \"important\"\n16: contextType: \"research\"\n17: _memory:\n18:   continuity:\n19:     packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n20:     last_updated_at: \"2026-04-26T14:33:00Z\"\n21:     last_updated_by: \"claude-opus-4-7\"\n22:     recent_action: \"Authored findings spec from live /memory:search reproduction\"\n23:     next_safe_action: \"Cluster fixes by root cause, then sequence remediation work in plan.md\"\n24:     blockers: []\n25:     key_files:\n26:       - \"spec.md\"\n27:       - \"plan.md\"\n28:       - \"tasks.md\"\n29:       - \"implementation-summary.md\"\n30:     session_dedup:\n31:       fingerprint: \"sha256:memory-search-runtime-bugs-2026-04-26\"\n32:       session_id: \"005-memory-search-runtime-bugs-2026-04-26\"\n33:       parent_session_id: null\n34:     completion_pct: 25\n35:     open_questions:\n36:       - \"Is the truncation logic miscalculating per-result tokens, or is the wrapper over-pruning by design?\"\n37:       - \"Should intent confidence below threshold T fall back to 'understand', or surface 'unknown'?\"\n38:       - \"Are enabled/contradicts/derived_from edge types implemented but unused, or absent from the schema entirely?\"\n39:     answered_questions: []\n40: template_source_hint: \"<!-- SPECKIT_TEMPLATE_SOURCE: spec-core | v2.2 -->\"\n41: ---\n42: # Feature Specification: /memory:search Runtime Bugs and Refinements\n43: \n44: <!-- SPECKIT_LEVEL: 1 -->\n45: <!-- SPECKIT_TEMPLATE_SOURCE: spec-core | v2.2 -->\n46: \n47: ---\n48: \n49: <!-- ANCHOR:metadata -->\n50: ## 1. METADATA\n51: \n52: | Field | Value |\n53: |-------|-------|\n54: | **Level** | 1 |\n55: | **Priority** | P1 |\n56: | **Status** | Findings Captured |\n57: | **Created** | 2026-04-26 |\n58: | **Branch** | `main` |\n59: | **Parent Spec** | ../spec.md |\n60: | **Sibling Phases** | `001-cache-warning-hooks`, `002-memory-quality-remediation`, `003-continuity-refactor-gates`, `004-memory-save-rewrite` |\n61: <!-- /ANCHOR:metadata -->\n62: \n63: ---\n64: \n65: <!-- ANCHOR:problem -->\n66: ## 2. PROBLEM & PURPOSE\n67: \n68: ### Problem Statement\n69: A live `/memory:search` session against the indexed-continuity runtime exposed contract violations and degraded UX across the retrieval, output rendering, and causal-graph subcommands. The empty-arguments gate fired correctly, but every downstream stage produced at least one observable defect: the intent classifier emitted `fix_bug` (confidence 0.098) for the query \"Semantic Search\" despite the spec mandating `understand` as the no-keyword-match fallback; the `memory_context` wrapper reported `truncated=true` and zero `results` while consuming only 2% of its 3000-3500 token budget; the assistant rendering used the explicitly-forbidden phrase \"Auto-triggered memories\"; `causal-stats` returned three of six valid relation types and labeled itself `health: \"healthy\"` while reporting `meetsTarget: false`. The root spec at `.opencode/commands/memory/search.md` documents the intended behavior, but the runtime drifts from it on multiple axes.\n70: \n71: ### Purpose\n72: Capture the bug catalog with reproducible runtime evidence so a subsequent remediation packet can address each cluster independently and re-verify against the same probes. This spec is intentionally findings-only — fixes belong to a follow-up implementation packet.\n73: <!-- /ANCHOR:problem -->\n74: \n75: ---\n76: \n77: <!-- ANCHOR:scope -->\n78: ## 3. SCOPE\n79: \n80: ### In Scope\n81: - Documenting every observed defect from the conversation transcript and the live reproduction probes against `memory_context`, `memory_search`, and `memory_causal_stats`.\n82: - Cross-referencing each defect against the canonical spec at `.opencode/commands/memory/search.md` to separate documented contract violations from undocumented gaps.\n83: - Clustering defects by root cause to enable independent remediation.\n84: - Recording the literal probe output as evidence so later runs can detect regression or confirm a fix.\n85: \n86: ### Out of Scope\n87: - Implementing fixes (deferred to a follow-up packet referenced from `plan.md`).\n88: - Modifying the `/memory:search` command source file at `.opencode/commands/memory/search.md`.\n89: - Touching the runtime MCP server source code under `.opencode/skills/system-spec-kit/mcp_server/`.\n90: - Re-architecting the hybrid retrieval pipeline (graph + vector + FTS5/BM25); only the observable surface defects are catalogued.\n91: \n92: ### Files to Change\n93: \n94: | File Path | Change Type | Description |\n95: |-----------|-------------|-------------|\n96: | `spec.md` | Create | This findings spec. |\n97: | `plan.md` | Create | Remediation strategy and root-cause clusters. |\n98: | `tasks.md` | Create | Per-defect work units. |\n99: | `implementation-summary.md` | Create | Placeholder until remediation lands. |\n100: | `description.json` | Create | Spec metadata for memory indexing. |\n101: | `graph-metadata.json` | Create | Graph-derived metadata for traversal. |\n102: <!-- /ANCHOR:scope -->\n103: \n104: ---\n105: \n106: <!-- ANCHOR:requirements -->\n107: ## 4. REQUIREMENTS\n108: \n109: ### P0 — Correctness Bugs (broken contract)\n110: \n111: | ID | Requirement | Acceptance Criteria |\n112: |----|-------------|---------------------|\n113: | REQ-001 | Intent classifier MUST honor the documented no-keyword-match fallback. | For queries with no keyword hit and `confidence < 0.30`, the classifier returns `understand` (per spec §4A \"Default fallback\") instead of an arbitrary low-confidence intent such as `fix_bug` (currently observed at 0.098 for \"Semantic Search\"). |\n114: | REQ-002 | `memory_context` MUST NOT zero out results when token usage is far below budget. | Reproduction: `memory_context({input:\"Semantic Search\", mode:\"auto\"})` currently returns `meta.tokenBudgetEnforcement.{enforced:true, truncated:true, returnedResultCount:2}` with `actualTokens:71` against `budgetTokens:3000`, and `data.content[0].text` containing `{\"count\":0,\"results\":[]}`. After fix, when `actualTokens / budgetTokens < 0.50`, the result count must equal `originalResultCount`. |\n115: | REQ-003 | Output rendering MUST use canonical vocabulary from spec §4A Step 4b. | Render layer (assistant or formatter) emits \"Trigger-matched spec-doc records\" and \"Constitutional rules\" — never \"Auto-triggered memories\", \"Triggered memories\", or \"Memories\". |\n116: | REQ-004 | Single intent source-of-truth MUST be exposed per response. | Currently `meta.intent.type = \"fix_bug\"` (conf 0.098) and `data.queryIntentRouting.queryIntent = \"semantic\"` (conf 0.8) appear in the SAME response with different values. Define one as authoritative for downstream rendering and either remove the other or label it explicitly as a separate concern (e.g., backend-routing vs intent-classification). |\n117: \n118: ### P1 — Degraded Signal (incorrect data exposed to caller)\n119: \n120: | ID | Requirement | Acceptance Criteria |\n121: |----|-------------|---------------------|\n122: | REQ-005 | `causal-stats` MUST emit all six valid relation types (zero-filled if absent). | Spec §5B lists `caused`, `enabled`, `supersedes`, `contradicts`, `derived_from`, `supports`. Runtime returns only the three with non-zero counts. After fix, `data.by_relation` always contains all six keys. |\n123: | REQ-006 | `causal-stats` health field MUST agree with `meetsTarget`. | Currently returns `health: \"healthy\"` AND `meetsTarget: false`. After fix, `meetsTarget=false` ⇒ `health ∈ {\"degraded\",\"below_target\"}`. |\n124: | REQ-007 | `QUALITY=gap` flag MUST trigger automatic broadening before returning. | Spec §1 promises 3-tier FTS fallback (FTS5 → BM25 → Grep) on weak retrievals. Currently `avg_score:0.13`, `quality:\"gap\"` is reported but no broadening occurs. After fix, gap-flagged retrievals attempt at least one fallback tier before returning. |\n125: | REQ-008 | Folder-discovery MUST NOT auto-bind on weak signal. | Currently \"Semantic Search\" caused `folderDiscovery.specFolder = \"skilled-agent-orchestration/023-sk-deep-research-creation\"` (no semantic relationship). After fix, folder-binding requires either explicit `specFolder` parameter or per-token similarity above a documented threshold. |\n126: | REQ-009 | \"Context quality is degraded\" hint MUST be conditional on actual session state. | Currently emitted on every fresh ephemeral session. After fix, hint is suppressed when `sessionScope==\"ephemeral\"` and `eventCounterStart==0`. |\n127: | REQ-010 | Causal-graph edge growth MUST be balanced across relation types. | Two snapshots ~15 minutes apart show 344 new edges, ALL `supersedes`. After fix, document the autonomous backfill job, expose its scope, and add per-relation coverage targets so `caused`/`supports`/etc. do not stagnate. |\n128: | REQ-011 | Session deduplication MUST be effective across calls within a single user session. | Currently each `/memory:search` invocation gets a new ephemeral `effectiveSessionId`, so `enableDedup=true` never engages. After fix, command threads a stable session identifier (e.g., per OpenCode session) or documents the limitation explicitly. |\n129: \n130: ### P2 — Refinement Opportunities\n131: \n132: | ID | Requirement | Acceptance Criteria |\n133: |----|-------------|---------------------|\n134: | REQ-012 | CocoIndex daemon health MUST be checked before relying on the vector channel. | Current behavior: command attempts CocoIndex search, fails silently when daemon is down. After fix, command emits an explicit `WARN: vector channel unavailable, lexical-only` line in the result block when daemon is unreachable. |\n135: | REQ-013 | Sub-target coverage MUST emit a remediation suggestion. | Currently `causal-stats` reports below-target coverage with no actionable hint. After fix, output includes \"Top N unlinked records\" or \"Run X to backfill\". |\n136: | REQ-014 | AskUserQuestion custom-answer routing MUST be defined. | Spec §4 offers 7 intents + \"Analysis tools\". A custom answer like \"Semantic Search\" currently becomes the QUERY (auto-detect intent) — undocumented. Either document this routing or add explicit \"Code search / Explore codebase\" option that routes to CocoIndex. |\n137: | REQ-015 | Trigger and constitutional channels SHOULD participate in dedup. | Currently the same 5 trigger matches resurface across calls in the same conversation; cosmetically redundant. |\n138: | REQ-016 | Intent classifier MUST be stable across paraphrased queries. | \"Semantic Search\" → `fix_bug`; \"Find stuff related to semantic search\" → `understand`. Refinement: add a stability test corpus and tune keywords or add embedding-based classification for low-confidence cases. |\n139: | REQ-017 | Naming collision between \"code graph\" (structural) and \"causal graph\" (memory) MUST be disambiguated. | Currently the startup hook says `Code Graph: empty` while `causal-stats` reports 1135 edges across 675 linked records. After fix, startup hook says \"structural code graph\" and `causal-stats` says \"memory causal graph\", or reuse a single canonical noun.|\n140: <!-- /ANCHOR:requirements -->\n141: \n142: ---\n143: \n144: ### Acceptance Scenarios\n145: \n146: **Given** a query with no documented intent keywords, **when** the classifier runs with confidence below 0.30, **then** it returns `understand` per spec §4A.\n147: \n148: **Given** a `memory_context` call where `actualTokens` is under 50% of `budgetTokens`, **when** the response is built, **then** `returnedResultCount` equals `originalResultCount` and `data.content` contains the actual results (not `count:0,results:[]`).\n149: \n150: **Given** a `causal-stats` call, **when** the response is built, **then** `by_relation` contains all six valid relation keys (zero-filled if absent) and `health` agrees with `meetsTarget`.\n151: \n152: **Given** an empty-results situation with trigger matches, **when** the formatter renders, **then** the heading reads \"Trigger-matched spec-doc records (matched on phrase \\\"<keyword>\\\")\" and never \"Auto-triggered memories\".\n153: \n154: ---\n155: \n156: <!-- ANCHOR:success-criteria -->\n157: ## 5. SUCCESS CRITERIA\n158: \n159: - **SC-001**: Every defect in §4 has a reproducible probe (command + expected literal output diff) recorded in `tasks.md`.\n160: - **SC-002**: Defects are clustered by root cause in `plan.md` so remediation can proceed cluster-by-cluster.\n161: - **SC-003**: The follow-up remediation packet, when implemented, can re-run the probes here and observe each acceptance criterion pass.\n162: - **SC-004**: Validation passes via `bash .opencode/skills/system-spec-kit/scripts/spec/validate.sh <this-folder> --strict`.\n163: <!-- /ANCHOR:success-criteria -->\n164: \n165: ---\n166: \n167: <!-- ANCHOR:risks -->\n168: ## 6. RISKS & DEPENDENCIES\n169: \n170: | Type | Item | Impact | Mitigation |\n171: |------|------|--------|------------|\n172: | Risk | Some defects may share a single root cause; over-counting could inflate scope. | Medium | `plan.md` clusters defects by root cause before remediation work begins. |\n173: | Risk | Probes are timestamp-bound (causal-graph edge counts grow); regression detection needs a different metric. | Low | Use coverage percent and presence-of-relation-type rather than absolute edge counts. |\n174: | Dependency | Remediation work touches `mcp_server/` source which is owned by sibling phases. | High | Coordinate with `004-memory-save-rewrite` and any active 005-memory-indexer-invariants work before landing changes. |\n175: | Dependency | CocoIndex daemon must be runnable for REQ-012 verification. | Medium | Document the start command and add a smoke test before remediation lands. |\n176: <!-- /ANCHOR:risks -->\n177: \n178: ---\n179: \n180: <!-- ANCHOR:questions -->\n181: ## 7. OPEN QUESTIONS\n182: \n183: - Is the truncation logic miscalculating per-result tokens, or is the wrapper over-pruning by design? Probe: log `tokenUsageSource`, per-result token estimate, and pruning decisions to identify whether estimates are inflated 30-50× (which would explain dropping at 2% reported usage).\n184: - Should intent confidence below threshold T fall back to `understand`, or surface a sentinel `unknown`? Spec says fallback is `understand`; runtime appears to skip the fallback.\n185: - Are `enabled`, `contradicts`, `derived_from` edge types implemented in the schema but unused, or absent entirely? Inspect `causal_edges` table and `memory_causal_link` enum to confirm.\n186: - Why does `health: \"healthy\"` co-exist with `meetsTarget: false`? Either definition is wrong, or \"healthy\" measures something else (orphaned edges = 0?).\n187: - Is the supersedes-only edge growth driven by an autonomous backfill job? If so, where does it live, and how can other relation types participate?\n188: \n189: ### POST-REMEDIATION VERIFICATION (captured 2026-04-26 18:49)\n190: \n191: Live MCP probes after the parallel remediation agent reported Cluster 1-3 P0 fixes landed. Verdict: **fixes NOT live in the running runtime.** Source patches may have been authored but `dist/` rebuild and/or MCP daemon restart was missed.\n192: \n193: Probe A — Cluster 2 (intent classifier, REQ-001/004) regression:\n194: ```\n195: memory_context({input:\"Semantic Search\", mode:\"deep\"})\n196: → meta.intent.type        = \"fix_bug\"     ← expected \"understand\" per fix\n197:   meta.intent.confidence  = 0.0980        ← below 0.30 threshold; fallback should fire\n198:   data.queryIntentRouting = \"semantic\" 0.8 ← dual-classifier dissonance still live\n199: ```\n200: \n201: Probe B — Cluster 1 (truncation wrapper, REQ-002) regression:\n202: ```\n203: memory_context({input:\"Semantic Search\"})\n204: → meta.tokenBudgetEnforcement = {budgetTokens:3500, actualTokens:65,\n205:    enforced:true, truncated:true, originalResultCount:5, returnedResultCount:3}\n206:   data.content[0].text = '{\"summary\":\"Context truncated to fit token budget\",\"data\":{\"count\":0,\"results\":[]}, ...}'\n207: ```\n208: 65 / 3500 = 1.9% utilization; same dump-to-empty bug as original Probe 2.\n209: \n210: Probe C — direct memory_search bypasses the broken wrapper and works correctly:\n211: ```\n212: memory_search({query:\"CocoIndex semantic vector search hybrid retrieval\"})\n213: → intent: \"understand\" (confidence 1.0)  ✓\n214:   results[0]: #962 skilled-agent-orchestration/022-mcp-coco-integration (sim 79.76%)  ✓\n215:   triggered: 022-hybrid-rag-fusion, 023-hybrid-rag-fusion-refinement  ✓\n216: ```\n217: \n218: ### NEW DEFECT CANDIDATES (surfaced via cocoindex_code probes 2026-04-26 18:49)\n219: \n220: REQ-018 (P1): cocoindex_code returns mirrored-folder duplicates. Searching \"semantic search vector embedding implementation\" returned the SAME research-06 markdown chunk (lines 279-303) ten times, each from a different mirror (`.gemini/specs/`, `.agents/specs/`, `.claude/specs/`, `.codex/specs/`, `specs/`, `.opencode/specs/`). All scored identical 0.6811. Effective unique-result rate: 10%. Need cross-mirror dedup at the indexing or query layer.\n221: \n222: REQ-019 (P1): cocoindex_code ranks markdown research above source code on technical queries. For \"code graph traversal callers query\", the top 9 results were duplicates of iteration-040 markdown (research notes with SQL examples); the actual implementation `mcp_server/handlers/code-graph/query.ts` ranked #10 at score 0.6648. For \"semantic search vector embedding implementation\" the actual cocoindex/vector-indexing source did not surface at all — only research markdown. Likely cause: keyword density in markdown narrative outweighs sparse symbols in source code under current ranking.\n223: \n224: ### Reproduction Evidence (captured 2026-04-26)\n225: \n226: These probes are stored under §7 to keep the canonical Level 1 template structure intact while preserving the regression-detection anchor.\n227: \n228: Probe 1 — Intent classifier mis-routing:\n229: ```\n230: memory_context({input:\"Semantic Search\", mode:\"auto\"})\n231: → meta.intent.type = \"fix_bug\"\n232:   meta.intent.confidence = 0.0980\n233:   meta.intent.source = \"auto-detected\"\n234:   data.queryIntentRouting.queryIntent = \"semantic\"\n235:   data.queryIntentRouting.confidence = 0.8\n236:   data.queryIntentRouting.matchedKeywords = [\"search\"]\n237: ```\n238: Spec §4A keyword table assigns NONE of {\"semantic\",\"search\"} to `fix_bug`; the documented fallback is `understand`.\n239: \n240: Probe 2 — Truncation drops to zero at 2% budget:\n241: ```\n242: memory_context({input:\"Semantic Search\", mode:\"auto\"})\n243: → meta.tokenBudgetEnforcement = {budgetTokens:3000, actualTokens:71,\n244:    enforced:true, truncated:true, originalResultCount:5, returnedResultCount:2}\n245:   data.content[0].text = '{\"summary\":\"Context truncated to fit token budget\",\"data\":{\"count\":0,\"results\":[]}, ...}'\n246: ```\n247: 71 / 3000 = 2.4% utilization; 5 results pruned to 0 in payload despite meta claiming 2 returned.\n248: \n249: Probe 3 — Causal-stats inconsistency:\n250: ```\n251: memory_causal_stats()\n252: → data.by_relation = {caused: 236, supersedes: 786, supports: 113}\n253:   data.health = \"healthy\"  data.meetsTarget = false\n254:   data.targetCoverage = \"60%\"  data.currentCoverage = \"56.21%\"\n255: ```\n256: Spec §5B template lists 6 relations; runtime emits 3. Health field contradicts target check.\n257: \n258: Probe 4 — Folder-discovery misfire:\n259: ```\n260: memory_context({input:\"Semantic Search\"})\n261: → meta.folderDiscovery.specFolder = \"skilled-agent-orchestration/023-sk-deep-research-creation\"\n262: ```\n263: The query has no semantic relationship; folder bound on stop-word-class signal.\n264: \n265: Probe 5 — Lopsided edge growth (T2 - T1 = ~15 min):\n266: ```\n267: T1: total_edges=791  by_relation={supersedes:442, caused:236, supports:113}\n268: T2: total_edges=1135 by_relation={supersedes:786, caused:236, supports:113}\n269: ```\n270: +344 edges, all `supersedes`. `caused`/`supports` unchanged. Coverage moved 56.77% → 56.21% (negative despite adds).\n271: \n272: Authoritative sources: `.opencode/commands/memory/search.md` (canonical spec), `.opencode/skills/system-spec-kit/mcp_server/` (runtime), sibling packets `001-cache-warning-hooks` (token-budget patterns), `002-memory-quality-remediation` (prior repair history).\n273: <!-- /ANCHOR:questions -->\n\n(End of file - total 273 lines)\n</content>","metadata":{"preview":"---\n# SPECKIT_TEMPLATE_SOURCE: spec-core | v2.2\ntitle: \"Feature Specification [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/spec]\"\ndescription: \"Findings spec cataloging /memory:search runtime bugs and refinements observed via live conversation + reproduction probes (intent classifier, truncation wrapper, output rendering, causal-stats hygiene).\"\ntrigger_phrases:\n  - \"005-memory-search-runtime-bugs\"\n  - \"memory search runtime bugs\"\n  - \"memory_context truncation drops results\"\n  - \"intent classifier dual-source dissonance\"\n  - \"auto-triggered vocabulary violation\"\n  - \"causal-stats relation omission\"\n  - \"ephemeral session dedup\"\n  - \"folder-discovery misfire\"\n  - \"context quality degraded false hint\"\nimportance_tier: \"important\"\ncontextType: \"research\"\n_memory:\n  continuity:\n    packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n    last_updated_at: \"2026-04-26T14:33:00Z\"","truncated":false,"loaded":[]},"title":".opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/spec.md","time":{"start":1777303017907,"end":1777303017915}}}}
{"type":"tool_use","timestamp":1777303020467,"sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","part":{"id":"prt_dcf83db11001vqr5A31ZVI9lSh","messageID":"msg_dcf83ba42001hQx5jXiG1dZ62p","sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","type":"tool","tool":"read","callID":"call_02_zsv8YFme0sNVqs659h7b8JMs","state":{"status":"completed","input":{"filePath":"/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/implementation-summary.md"},"output":"<path>/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/implementation-summary.md</path>\n<type>file</type>\n<content>\n1: ---\n2: # SPECKIT_TEMPLATE_SOURCE: impl-summary-core | v2.2\n3: title: \"Implementation Summary [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/implementation-summary]\"\n4: description: \"Findings-only packet — implementation deferred to follow-up remediation packet. Captures bug catalog, root-cause clusters, and reproduction probes for /memory:search runtime defects.\"\n5: trigger_phrases:\n6:   - \"005-memory-search-runtime-bugs implementation\"\n7:   - \"memory search runtime findings packet\"\n8: importance_tier: \"important\"\n9: contextType: \"implementation\"\n10: _memory:\n11:   continuity:\n12:     packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n13:     last_updated_at: \"2026-04-26T14:33:00Z\"\n14:     last_updated_by: \"claude-opus-4-7\"\n15:     recent_action: \"Captured findings; remediation deferred to follow-up packet\"\n16:     next_safe_action: \"Schedule remediation packet to consume Cluster 1-7 from plan.md\"\n17:     blockers: []\n18:     key_files:\n19:       - \"spec.md\"\n20:       - \"plan.md\"\n21:       - \"tasks.md\"\n22:       - \"implementation-summary.md\"\n23:     completion_pct: 100\n24:     open_questions:\n25:       - \"Truncation root cause: estimator inflation vs unconditional stub-replace\"\n26:       - \"Intent classifier authority: meta.intent vs data.queryIntentRouting\"\n27:       - \"Edge type schema: are enabled/contradicts/derived_from implemented?\"\n28:     answered_questions: []\n29: template_source_hint: \"<!-- SPECKIT_TEMPLATE_SOURCE: impl-summary-core | v2.2 -->\"\n30: ---\n31: # Implementation Summary\n32: \n33: <!-- SPECKIT_LEVEL: 1 -->\n34: <!-- SPECKIT_TEMPLATE_SOURCE: impl-summary-core | v2.2 -->\n35: <!-- HVR_REFERENCE: .opencode/skills/sk-doc/references/hvr_rules.md -->\n36: \n37: ---\n38: \n39: <!-- ANCHOR:metadata -->\n40: ## Metadata\n41: \n42: | Field | Value |\n43: |-------|-------|\n44: | **Spec Folder** | 005-memory-search-runtime-bugs |\n45: | **Completed** | 2026-04-26 (findings only) |\n46: | **Level** | 1 |\n47: | **Status** | Findings captured; remediation deferred |\n48: <!-- /ANCHOR:metadata -->\n49: \n50: ---\n51: \n52: <!-- ANCHOR:what-built -->\n53: ## What Was Built\n54: \n55: A findings-only spec packet documenting 17 defects in the `/memory:search` command runtime, observed during a live conversation and confirmed via direct MCP probes. Defects are organized into 4 P0 (correctness), 7 P1 (degraded signal), and 6 P2 (refinement) requirements (REQ-001 through REQ-017). The plan groups them into 7 root-cause clusters; tasks decompose each cluster into work units for a follow-up remediation packet.\n56: \n57: ### Cluster 1-3 Remediation (landed in this packet on 2026-04-26)\n58: \n59: The findings packet was extended in-place to land the three P0 cluster fixes:\n60: \n61: - **Cluster 1 — Truncation Wrapper (REQ-002)**:\n62:   - Added a sanity-guard early return in `enforceTokenBudget()` so when `actualTokens / budgetTokens < 0.50` the result is returned unmodified, matching the spec acceptance criterion.\n63:   - Threaded a `preservedAfterStructural` snapshot through the structural truncation loop so when the second-pass `compactStructuredResult` cannot reach budget, the `fallbackToStructuredBudget()` candidate-state ladder now starts with a \"preserve survivors\" envelope (full + metadata-only) before falling through to the legacy zero-fill envelopes. Returned-count metadata is re-derived from the actual emitted payload to eliminate the historical mismatch where `returnedResultCount=2` shipped alongside `count:0,results:[]`.\n64:   - File: `mcp_server/handlers/memory-context.ts` (`enforceTokenBudget` and helpers, plus the call-site at the very end of the function).\n65: \n66: - **Cluster 2 — Intent Classifier Drift (REQ-001 / REQ-004 / REQ-016)**:\n67:   - Added a centroid-only confidence floor (0.30, per spec §4A \"Default fallback\") that fires only when the winning intent has zero keyword + zero regex-pattern evidence. Existing single-keyword classification stays at the legacy 0.08 floor, so the 80%-accuracy regression suite (T037 / T060 / C138) keeps passing while the \"Semantic Search\" → fix_bug bug is eliminated.\n68:   - Annotated dual-classifier output: `meta.intent` is now explicitly `classificationKind: \"task-intent\"` and authoritative for rendering / anchors / mode-routing; `data.queryIntentRouting` is `classificationKind: \"backend-routing\"` and authoritative only for channel selection. A `seeAlso` cross-pointer breaks the symmetry the original probe flagged.\n69:   - Files: `mcp_server/lib/search/intent-classifier.ts` and `mcp_server/handlers/memory-context.ts`.\n70: \n71: - **Cluster 3 — Output Rendering Vocabulary (REQ-003)**:\n72:   - Added a \"Forbidden Phrase Enforcement\" subsection to the canonical command spec at `.opencode/commands/memory/search.md` §4A Step 4b. The subsection is a literal substitution table covering \"Auto-triggered memories\", \"Triggered memories\", \"Constitutional memories\", and the standalone \"Memories\" header; spells out a mandatory pre-render gate the assistant runs before emitting; and provides a regression-safe `grep -Eci` verification command.\n73:   - Source-side runtime is rendered by the assistant, so the only correct repair surface was the spec — server-side renderer was rejected to keep the change surgical.\n74: \n75: ### Verification\n76: \n77: - All targeted vitest suites green: token-budget-enforcement, memory-context, handler-causal-graph, intent-classifier, intent-routing, gate-d-regression-intent-routing (200 passing tests).\n78: - Inline runtime probes via `node` against the freshly-built `dist/`:\n79:   - `classifyIntent(\"Semantic Search\")` → `understand` (was `fix_bug` at 0.098)\n80:   - `classifyIntent(\"Find stuff related to semantic search\")` → `understand` (REQ-016 stability)\n81:   - `classifyIntent(\"fix the login bug\")` → `fix_bug` (single-keyword regression-safe)\n82:   - `enforceTokenBudget` under-budget → `truncated:false`, full results preserved\n83:   - `enforceTokenBudget` true over-budget → `returnedResultCount` matches `data.results.length`\n84: - `bash .opencode/skills/system-spec-kit/scripts/spec/validate.sh ... --strict` → PASSED (0 errors, 0 warnings).\n85: \n86: ### Out of Scope This Packet\n87: \n88: Clusters 4-7 (P1 / P2) remain deferred per the original plan. Boundary respected: did not refactor surrounding code beyond the bug surface; did not modify the empty-arguments interactive prompt structure; did not touch the canonical command spec for anything except the Cluster 3 forbidden-phrase enforcement section.\n89: \n90: ### Headline Defects\n91: \n92: - **Truncation drops results to zero at 2% budget usage** — `memory_context({input:\"Semantic Search\"})` reports `actualTokens:71 / budgetTokens:3000`, yet `data.content` returns `count:0,results:[]` with `truncated:true`.\n93: - **Intent classifier returns `fix_bug` for \"Semantic Search\"** at confidence 0.098 — spec §4A documents `understand` as the no-match fallback.\n94: - **Dual-classifier dissonance** — same response carries `meta.intent.type = \"fix_bug\"` (0.098) AND `data.queryIntentRouting.queryIntent = \"semantic\"` (0.8); no documented resolution policy.\n95: - **Vocabulary violation** — render output used \"Auto-triggered memories\" — explicitly forbidden by spec §4A Step 4b.\n96: - **`causal-stats` returns 3 of 6 relation types**, reports `health: \"healthy\"` while `meetsTarget: false`.\n97: - **Lopsided graph growth** — 344 new edges in 15 minutes, 100% `supersedes`; `caused`/`supports` stagnate.\n98: \n99: ### Files Changed\n100: \n101: | File | Action | Purpose |\n102: |------|--------|---------|\n103: | `spec.md` | Create | Bug catalog with REQ-001..017 and live probe evidence |\n104: | `plan.md` | Create | 7 root-cause clusters with change surface and verification per cluster |\n105: | `tasks.md` | Create | Findings-packet tasks (T0.1-T0.7) + deferred remediation tasks (T1-T7) |\n106: | `implementation-summary.md` | Create | This file |\n107: | `description.json` | Create | Memory-indexer metadata |\n108: | `graph-metadata.json` | Create | Graph traversal metadata |\n109: <!-- /ANCHOR:what-built -->\n110: \n111: ---\n112: \n113: <!-- ANCHOR:how-delivered -->\n114: ## How It Was Delivered\n115: \n116: 1. Read the canonical command spec at `.opencode/commands/memory/search.md` to establish the contract.\n117: 2. Reviewed the conversation transcript for observable defects.\n118: 3. Ran live MCP probes (`memory_context`, `memory_causal_stats`) to confirm and expand the defect set with hard evidence.\n119: 4. Cross-referenced each defect against the spec to separate contract violations from undocumented gaps.\n120: 5. Clustered defects by suspected root cause to enable independent remediation.\n121: 6. Captured every probe's literal output in `spec.md` §8 so regressions can be detected.\n122: <!-- /ANCHOR:how-delivered -->\n123: \n124: ---\n125: \n126: <!-- ANCHOR:decisions -->\n127: ## Key Decisions\n128: \n129: | Decision | Why |\n130: |----------|-----|\n131: | Findings-only packet | Remediation crosses 7 surfaces in `mcp_server/`; bundling them risks scope creep. A separate packet can sequence Phase A/B/C from `plan.md`. |\n132: | Capture probe literals in `spec.md` §8 | Future runs can diff against the recorded output to confirm fix or regression. |\n133: | Cluster by root cause, not by severity | Defects sharing a root cause (e.g., REQ-001/004/016 all flow from intent classifier) are easier to fix together. |\n134: | 17 separate REQs even when clustered | Granular IDs let tasks reference exact acceptance criteria; clustering happens in plan.md. |\n135: <!-- /ANCHOR:decisions -->\n136: \n137: ---\n138: \n139: <!-- ANCHOR:verification -->\n140: ## Verification\n141: \n142: | Check | Result |\n143: |-------|--------|\n144: | All 17 defects map to a REQ ID | PASS |\n145: | Each REQ has a falsifiable acceptance criterion | PASS |\n146: | Probe evidence captured verbatim | PASS — see spec §8 |\n147: | Validation via `validate.sh --strict` | PENDING — runs at packet close |\n148: | Sibling cross-references resolve | PASS — siblings are 001-cache-warning-hooks, 002-memory-quality-remediation, 003-continuity-refactor-gates, 004-memory-save-rewrite |\n149: <!-- /ANCHOR:verification -->\n150: \n151: ---\n152: \n153: <!-- ANCHOR:limitations -->\n154: ## Known Limitations\n155: \n156: 1. **No remediation in this packet.** All 7 clusters are deferred to a follow-up packet. This packet exists to capture findings while they are fresh; consuming the catalog requires a separate code-changing packet.\n157: 2. **Probes are timestamp-bound.** Causal-graph edge counts grow continuously; regression detection should use coverage percent and presence-of-relation-type rather than absolute counts.\n158: 3. **Some defects may share root causes not yet identified.** Cluster 2 may be fully explained by a single classifier-threshold fix; Cluster 1 may be one line in the budget enforcement wrapper. Until the source is read, clustering is informed-guess based on observable behavior.\n159: 4. **CocoIndex daemon health was not directly probed.** REQ-012 is based on the conversation transcript reporting daemon-not-running; verify the daemon's actual state before remediation.\n160: <!-- /ANCHOR:limitations -->\n\n(End of file - total 160 lines)\n</content>","metadata":{"preview":"---\n# SPECKIT_TEMPLATE_SOURCE: impl-summary-core | v2.2\ntitle: \"Implementation Summary [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/implementation-summary]\"\ndescription: \"Findings-only packet — implementation deferred to follow-up remediation packet. Captures bug catalog, root-cause clusters, and reproduction probes for /memory:search runtime defects.\"\ntrigger_phrases:\n  - \"005-memory-search-runtime-bugs implementation\"\n  - \"memory search runtime findings packet\"\nimportance_tier: \"important\"\ncontextType: \"implementation\"\n_memory:\n  continuity:\n    packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n    last_updated_at: \"2026-04-26T14:33:00Z\"\n    last_updated_by: \"claude-opus-4-7\"\n    recent_action: \"Captured findings; remediation deferred to follow-up packet\"\n    next_safe_action: \"Schedule remediation packet to consume Cluster 1-7 from plan.md\"\n    blockers: []\n    key_files:\n      - \"spec.md\"\n      - \"plan.md\"","truncated":false,"loaded":[]},"title":".opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/implementation-summary.md","time":{"start":1777303020455,"end":1777303020465}}}}
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{"type":"step_start","timestamp":1777303023893,"sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","part":{"id":"prt_dcf83f1130014508MmvaGASnmZ","messageID":"msg_dcf83e68b001AlCmiYPQLslFgr","sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","snapshot":"e19080ec7eab475cc8a21875899cdbf30266b873","type":"step-start"}}
{"type":"text","timestamp":1777303048550,"sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","part":{"id":"prt_dcf8436a2001pR6blWQVF3uCMg","messageID":"msg_dcf83e68b001AlCmiYPQLslFgr","sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","type":"text","text":"Now I have full context. T101 is \"Locate `memory_context` budget enforcement code\" in Cluster 1, already marked `[x]`. Let me run the preflight.","time":{"start":1777303048549,"end":1777303048549}}}
{"type":"tool_use","timestamp":1777303049362,"sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","part":{"id":"prt_dcf843d3b001RIFKX0gBJNlC4Q","messageID":"msg_dcf83e68b001AlCmiYPQLslFgr","sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","type":"tool","tool":"spec_kit_memory_task_preflight","callID":"call_00_ECfrXFsXRxYt4WBFqwy5DzyO","state":{"status":"completed","input":{"specFolder":"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs","taskId":"T101","knowledgeScore":75,"uncertaintyScore":15,"contextScore":85,"knowledgeGaps":["Have not independently verified line numbers at memory-context.ts:447 against the current source; T101 is already marked complete, so this preflight is retroactive"]},"output":"{\n  \"summary\": \"Preflight baseline captured for T101\",\n  \"data\": {\n    \"success\": true,\n    \"record\": {\n      \"id\": 4,\n      \"specFolder\": \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\",\n      \"taskId\": \"T101\",\n      \"sessionId\": null,\n      \"phase\": \"preflight\",\n      \"baseline\": {\n        \"knowledge\": 75,\n        \"uncertainty\": 15,\n        \"context\": 85\n      },\n      \"knowledgeGaps\": [\n        \"Have not independently verified line numbers at memory-context.ts:447 against the current source; T101 is already marked complete, so this preflight is retroactive\"\n      ],\n      \"timestamp\": \"2026-04-27T15:17:29.359Z\"\n    }\n  },\n  \"hints\": [\n    \"Call task_postflight with taskId: \\\"T101\\\" after completing the task\",\n    \"Knowledge gaps can guide your exploration focus\",\n    \"Auto-surface hook: injected 2 constitutional and 5 triggered memories (1112ms)\"\n  ],\n  \"meta\": {\n    \"tool\": \"task_preflight\",\n    \"tokenCount\": 1189,\n    \"cacheHit\": false,\n    \"autoSurface\": {\n      \"constitutionalCount\": 2,\n      \"triggeredCount\": 5,\n      \"surfaced_at\": \"2026-04-27T15:17:29.357Z\",\n      \"latencyMs\": 1112\n    },\n    \"autoSurfacedContext\": {\n      \"constitutional\": [\n        {\n          \"id\": 2574,\n          \"specFolder\": \"system-spec-kit\",\n          \"filePath\": \"/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/constitutional/gate-tool-routing.md\",\n          \"title\": \"TOOL ROUTING - Search & Retrieval Decision Tree\",\n          \"importanceTier\": \"constitutional\",\n          \"retrieval_directive\": \"Always surface when: TOOL ROUTING - Search & Retrieval Decision Tree | Prioritize when: task context aligns with \\\"TOOL ROUTING - Search & Retrieval Decision Tree\\\"\"\n        },\n        {\n          \"id\": 415,\n          \"specFolder\": \"system-spec-kit\",\n          \"filePath\": \"/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/constitutional/gate-enforcement.md\",\n          \"title\": \"GATE ENFORCEMENT - Edge Cases & Cross-Reference\",\n          \"importanceTier\": \"constitutional\",\n          \"retrieval_directive\": \"Always surface when: GATE ENFORCEMENT - Edge Cases & Cross-Reference | Prioritize when: task context aligns with \\\"GATE ENFORCEMENT - Edge Cases & Cross-Reference\\\"\"\n        }\n      ],\n      \"triggered\": [\n        {\n          \"memory_id\": 2305,\n          \"spec_folder\": \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/003-continuity-refactor-gates\",\n          \"title\": \"...tem-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/003-continuity-refactor-gates/handover]\",\n          \"matched_phrases\": [\n            \"spec\",\n            \"kit\",\n            \"026\",\n            \"graph\",\n            \"003\",\n            \"continuity\"\n          ]\n        },\n        {\n          \"memory_id\": 80,\n          \"spec_folder\": \"system-spec-kit/026-graph-and-context-optimization/002-continuity-memory-runtime/003-continuity-refactor-gates\",\n          \"title\": \"...tem-spec-kit/026-graph-and-context-optimization/002-continuity-memory-runtime/003-continuity-refactor-gates/handover]\",\n          \"matched_phrases\": [\n            \"spec\",\n            \"kit\",\n            \"026\",\n            \"graph\",\n            \"003\",\n            \"continuity\"\n          ]\n        },\n        {\n          \"memory_id\": 2511,\n          \"spec_folder\": \"system-spec-kit/026-graph-and-context-optimization/007-hook-parity\",\n          \"title\": \"...em-spec-kit/026-graph-and-context-optimization/007-hook-parity/research/007-hook-parity-pt-01/research]\",\n          \"matched_phrases\": [\n            \"spec\",\n            \"kit\",\n            \"026\",\n            \"graph\"\n          ]\n        },\n        {\n          \"memory_id\": 2498,\n          \"spec_folder\": \"system-spec-kit/026-graph-and-context-optimization/007-hook-parity/007-copilot-writer-wiring\",\n          \"title\": \"...-spec-kit/026-graph-and-context-optimization/007-hook-parity/007-copilot-writer-wiring/implementation-summary]\",\n          \"matched_phrases\": [\n            \"spec\",\n            \"kit\",\n            \"026\",\n            \"graph\"\n          ]\n        },\n        {\n          \"memory_id\": 2493,\n          \"spec_folder\": \"system-spec-kit/026-graph-and-context-optimization/007-hook-parity/006-copilot-wrapper-schema-fix\",\n          \"title\": \"...-kit/026-graph-and-context-optimization/007-hook-parity/006-copilot-wrapper-schema-fix/implementation-summary]\",\n          \"matched_phrases\": [\n            \"kit\",\n            \"026\",\n            \"graph\",\n            \"context\"\n          ]\n        }\n      ],\n      \"surfaced_at\": \"2026-04-27T15:17:29.357Z\",\n      \"latencyMs\": 1112\n    },\n    \"tokenBudget\": 1500\n  }\n}","metadata":{"truncated":false},"title":"","time":{"start":1777303048238,"end":1777303049361},"attachments":[]}}}
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{"type":"text","timestamp":1777303058247,"sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","part":{"id":"prt_dcf8462c4002Ri7f6DPNDHpf00","messageID":"msg_dcf8456250019F0IZU2RBCgA6J","sessionID":"ses_2307dae9effeKzlJJ1L2dyl161","type":"text","text":"Preflight captured for T101:\n\n| Field | Value |\n|---|---|\n| **Spec Folder** | `.../005-memory-search-runtime-bugs` |\n| **Task** | T101 — Locate `enforceTokenBudget` in `memory-context.ts:447` |\n| **Knowledge** | 75% |\n| **Uncertainty** | 15% |\n| **Context** | 85% |\n| **Record ID** | 4 |\n| **Note** | T101 already `[x]` completed per tasks.md; Cluster 1 fix landed in `mcp_server/handlers/memory-context.ts` (early-return guard for <50% budget + `preservedAfterStructural` snapshot). Preflight is retroactive. |\n\n**Knowledge Gap**: Haven't independently verified exact line numbers against current source at `memory-context.ts`.","time":{"start":1777303058245,"end":1777303058245}}}
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