[93m[1m! [0m agent "general" is a subagent, not a primary agent. Falling back to default agent
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{"type":"tool_use","timestamp":1777227923141,"sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","part":{"id":"prt_dcb09f80e0015BCWYFM0F3LwSw","messageID":"msg_dcb09d3d90012zOq5DM299TJWM","sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","type":"tool","tool":"cocoindex_code_search","callID":"call_00_ezg0g0Lqwce1IYMBYTZY9ueZ","state":{"status":"completed","input":{"query":"search system implementation","limit":8,"refresh_index":false},"output":"{\n  \"success\": true,\n  \"results\": [\n    {\n      \"file_path\": \".gemini/specs/02--system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    },\n    {\n      \"file_path\": \"specs/02--system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    },\n    {\n      \"file_path\": \".agents/specs/02--system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    },\n    {\n      \"file_path\": \".claude/specs/02--system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    },\n    {\n      \"file_path\": \".codex/specs/02--system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    },\n    {\n      \"file_path\": \".gemini/specs/system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    },\n    {\n      \"file_path\": \"specs/system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    },\n    {\n      \"file_path\": \".agents/specs/system-spec-kit/022-hybrid-rag-fusion/001-hybrid-rag-fusion-epic/research/005 - analysis-codex-3.md\",\n      \"language\": \"markdown\",\n      \"content\": \"## 1) System Architecture Overview (All Analyzed Systems)\\n\\n## 1.1 `qmd` (tobi/qmd)\\n`qmd` is a local-first retrieval engine for markdown knowledge with three retrieval modes and MCP access. Its architecture (documented in README) includes:\\n\\n- **Ingestion/index layer**: markdown parsing, title extraction, hash/docid generation, SQLite storage, FTS5 indexing.\\n- **Semantic layer**: chunking (~900 tokens, overlap), embedding generation, vector store lookup.\\n- **Retrieval orchestration layer**:\\n  - `search`: BM25/FTS only\\n  - `vsearch`: vector only\\n  - `query`/`deep_search`: hybrid with expansion + rerank\\n- **Rerank layer**: cross-encoder reranker via `node-llama-cpp`.\\n- **Access layer**: CLI + MCP server over stdio and HTTP (`/mcp`, `/health`), with daemon support.\\n\\nNotable technical baseline:\\n- Node/Bun runtime requirements.\\n- Models loaded locally (GGUF) with explicit caching and lifecycle behavior.\\n- MCP tools designed around agent operations (`search`, `get`, `multi-get`, `status`).\",\n      \"start_line\": 17,\n      \"end_line\": 34,\n      \"score\": 0.5781098854342712\n    }\n  ],\n  \"total_returned\": 8,\n  \"offset\": 0,\n  \"message\": null\n}","metadata":{"truncated":false},"title":"","time":{"start":1777227922766,"end":1777227923141},"attachments":[]}}}
{"type":"tool_use","timestamp":1777227925517,"sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","part":{"id":"prt_dcb09fe73001BjtrkmGDf9e854","messageID":"msg_dcb09d3d90012zOq5DM299TJWM","sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","type":"tool","tool":"grep","callID":"call_01_MnZttt1NhLKbHIA3aUshMFtE","state":{"status":"completed","input":{"pattern":"search.*engine|full.?text.*search|fts5|vector.*search|semantic.*search","include":"*.ts","path":"/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode"},"output":"Found 354 matches (showing first 100)\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/memory-context.ts:\n  Line 47: import * as vectorIndex from '../lib/search/vector-index.js';\n  Line 860:   // Deep: Comprehensive semantic search with full context\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tool-schemas.ts:\n  Line 55:   description: '[L2:Core] Search indexed spec-doc continuity semantically using vector similarity. Returns ranked results with similarity scores. Constitutional tier rules are ALWAYS included at the top of results (~2000 tokens max), regardless of query. Requires query (string), concepts (array of 2-5 strings), or cursor (string) for continuation pagination. Supports intent-aware retrieval (REQ-006) with task-specific weight adjustments. When implicit feedback logging is enabled, searches also emit shadow-only feedback signals such as search_shown and, for includeContent runs, result_cited. Token Budget: 3500. For code search by concept/intent, prefer mcp__cocoindex_code__search (CocoIndex). For structural code queries (callers, imports), prefer code_graph_query.',\n  Line 454:         items: { type: 'string', enum: ['vector', 'bm25', 'fts5', 'graph', 'trigger'] },\n  Line 600:   description: '[L6:Analysis] Get LLM-oriented compact graph neighborhoods. Accepts CocoIndex search results as seeds — use CocoIndex (mcp__cocoindex_code__search) for semantic search first, then pass results here for structural expansion. Supports manual seeds (provider: manual) and graph seeds (provider: graph). Modes: neighborhood (1-hop calls+imports), outline (file symbols), impact (reverse callers). When readiness requires a full scan, returns an explicit blocked payload with requiredAction `code_graph_scan`, readiness metadata, and lastPersistedAt instead of degraded graph answers. Successful responses include metadata.partialOutput for deadline/budget truncation details (reasons, omittedSections, omittedAnchors, truncatedText). Token Budget: 1200.',\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/lib/cognitive/temporal-contiguity.ts:\n  Line 51:  * Apply temporal-contiguity boost to vector search results.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/memory-crud-delete.ts:\n  Line 10: import * as vectorIndex from '../lib/search/vector-index.js';\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/memory-bulk-delete.ts:\n  Line 8: import * as vectorIndex from '../lib/search/vector-index.js';\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/lib/search/entity-linker.ts:\n  Line 142:   'semantic': 'search',\n  Line 143:   'semantics': 'search',\n  Line 171:  * nounPhrases('How does vector search indexing work?');\n  Line 172:  * // ['vector', 'search', 'indexing', 'work']\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/skill_advisor/lib/scorer/fusion.ts:\n  Line 218:   if (/\\bsemantic (code )?search\\b/.test(promptLower)) {\n  Line 221:     if (!activeDeepResearch && recommendation.skill === 'sk-deep-research') return R.semanticSearchDeepResearchPenalty;\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/skill_advisor/lib/scorer/scoring-constants.ts:\n  Line 107:   // semantic search intent\n  Line 109:   readonly semanticSearchDeepResearchPenalty: number;\n  Line 176:     semanticSearchDeepResearchPenalty: -0.2,\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tests/context-server.vitest.ts:\n  Line 1859:       const channels = ['vector', 'fts5', 'bm25', 'degree']\n  Line 1875:       expect(instructions).toContain('Search channels: vector, fts5, bm25, degree.')\n  Line 1886:         const channels = ['vector', 'fts5']\n  Line 2828:       const channels: string[] = ['vector', 'fts5']\n  Line 2872:       expect(result).toContain('fts5')\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/scripts/tests/fixtures/manual-playbook-fixture.ts:\n  Line 353:   const vectorIndex = await import('../../../mcp_server/dist/lib/search/vector-index.js') as VectorIndexModule;\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/memory-search.ts:\n  Line 609: /** Handle memory_search tool — performs hybrid vector/BM25 search with intent-aware ranking.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/formatters/search-results.ts:\n  Line 70: /** Raw search result from database/vector search */\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/schemas/tool-input-schemas.ts:\n  Line 400:   channels: z.array(z.enum(['vector', 'bm25', 'fts5', 'graph', 'trigger'])).optional(),\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/skill_advisor/lib/scorer/lanes/lexical.ts:\n  Line 30:   'mcp-coco-index': ['semantic search', 'vector search', 'grep not enough', 'find code', 'where logic'],\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/skill_advisor/lib/scorer/lanes/explicit.ts:\n  Line 126:   'semantic code search': [['mcp-coco-index', 1]],\n  Line 132:   'vector-search': [['mcp-coco-index', 1]],\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/code_graph/tests/code-graph-context-handler.vitest.ts:\n  Line 192:         source: 'semantic-search',\n  Line 224:         source: 'semantic-search',\n  Line 237:         source: 'semantic-search',\n  Line 244:       source: 'semantic-search',\n  Line 275:         source: 'semantic-search',\n  Line 306:         source: 'semantic-search',\n  Line 318:         source: 'semantic-search',\n  Line 324:       source: 'semantic-search',\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tests/dual-scope-hooks.vitest.ts:\n  Line 38: import * as vectorIndex from '../lib/search/vector-index';\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/lib/session/session-snapshot.ts:\n  Line 185:     routingParts.push('semantic/concept search → mcp__cocoindex_code__search');\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/hooks/memory-surface.ts:\n  Line 6: import * as vectorIndex from '../lib/search/vector-index.js';\n  Line 468:     toolRoutingRules.push('semantic/concept queries → mcp__cocoindex_code__search');\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/hooks/gemini/session-prime.ts:\n  Line 190:         '- `memory_search({ query })` - semantic search',\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/hooks/claude/session-prime.ts:\n  Line 250:         '- `memory_search({ query })` — semantic search',\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/context-server.ts:\n  Line 77: import * as vectorIndex from './lib/search/vector-index.js';\n  Line 789:   const channels: string[] = ['vector', 'fts5'];\n  Line 1049:             existingHints.push('Tip: For code search queries, consider using mcp__cocoindex_code__search for semantic code search or code_graph_query for structural lookups.');\n  Line 1868:         console.error(`[context-server] Learned triggers ready (migrated=${migrated}, fts5Isolated=${isolated})`);\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/skill_advisor/lib/scorer/text.ts:\n  Line 96:   const skillSurface = /\\b(review|audit|deep[- ]research|deep[- ]review|semantic search|figma|clickup|chrome devtools|git worktree|prompt)\\b/.test(promptLower);\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/memory-crud-update.ts:\n  Line 11: import * as vectorIndex from '../lib/search/vector-index.js';\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/api/index.ts:\n  Line 49:   fts5Bm25Search,\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/lib/search/hybrid-search.ts:\n  Line 4: // Combines vector, FTS, and BM25 search with fallback\n  Line 15: import { fts5Bm25Search } from './sqlite-fts.js';\n  Line 304:  * Initialize hybrid search with database, vector search, and optional graph search dependencies.\n  Line 306:  * @param vectorFn - Optional vector search function for semantic similarity.\n  Line 425:  * Check whether the FTS5 full-text search table exists in the database.\n  Line 446:  * Run FTS5 full-text search with weighted BM25 scoring and optional spec folder filtering.\n  Line 466:     // Filters: deprecated-tier exclusion and spec-folder matching handled by fts5Bm25Search\n  Line 467:     const bm25Results = fts5Bm25Search(db, query, { limit, specFolder, includeArchived });\n  Line 1737:  * @param embedding - Optional embedding vector for semantic search.\n  Line 1794:  * @param embedding - Optional embedding vector for semantic search.\n  Line 2171:  * @param embedding - Optional embedding vector for semantic search.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/shared/algorithms/adaptive-fusion.ts:\n  Line 18:   /** Weight for semantic/vector search results (0-1) */\n  Line 203:  * @param semanticResults - Results from vector/semantic search\n  Line 320:  * @param semanticResults - Results from vector/semantic search\n  Line 382:  * @param semanticResults - Results from vector/semantic search\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tests/handler-memory-save.vitest.ts:\n  Line 620:       // from tripping vector_search dim validation; tests that need to simulate\n  Line 2432:     // vector_search with the harness's tiny fixture embedding. Requires a\n  Line 3445:           const actual = await vi.importActual<typeof import('../lib/search/vector-index-mutations')>('../lib/search/vector-index-mutations');\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/save/types.ts:\n  Line 114:  * filter or overfetch window dropped otherwise-relevant vector-search\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/memory-index.ts:\n  Line 25: import * as vectorIndex from '../lib/search/vector-index.js';\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/handlers/pe-gating.ts:\n  Line 4: import * as vectorIndex from '../lib/search/vector-index.js';\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/scripts/tests/test-integration.vitest.ts:\n  Line 278:     const vectorIndex = require(path.join(MCP_SERVER_DIR, 'dist', 'lib', 'search', 'vector-index.js'));\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tests/transcript-planner-export.vitest.ts:\n  Line 7: import * as vectorIndex from '../lib/search/vector-index';\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tests/search-archival.vitest.ts:\n  Line 24: describe('T206 - vector_search accepts includeArchived [deferred - DB dependency]', () => {\n  Line 26:     expect(VECTOR_INDEX_QUERIES_SOURCE).toContain('export { vector_search as vectorSearch };');\n  Line 30:     expect(VECTOR_INDEX_QUERIES_SOURCE).toMatch(/export function vector_search\\([\\s\\S]*?includeArchived = false/);\n  Line 133:   it('T235-BH1: vector_search does not use the old WHERE-clause archive filter', () => {\n  Line 144:     // vector_search and multi_concept_search, and referenced in other\n  Line 147:     // At least 4: vector_search param, multi_concept_search param,\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tests/integration-138-pipeline.vitest.ts:\n  Line 164:       sourcesHit: ['vector', 'fts5', 'graph'],\n  Line 204:   it('T3: pipeline hits vector, fts5, and graph sources', () => {\n  Line 208:     expect(response.metrics.sourcesHit).toContain('fts5');\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/scripts/tests/trigger-phrase-sanitizer.vitest.ts:\n  Line 41:     expect(sanitizeTriggerPhrase('semantic search')).toEqual({ keep: true });\n  Line 49:       'semantic search',\n  Line 50:       'semantic search',\n  Line 54:     // so 'semantic search' (15 chars) comes before 'mcp' (3 chars).\n  Line 56:       'semantic search',\n  Line 66:       'semantic search',\n  Line 91:       'semantic search',\n  Line 97:     expect(result).toEqual(['semantic search', 'mcp']);\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/skills/system-spec-kit/mcp_server/tests/vector-index-impl.vitest.ts:\n  Line 9: // Core vector search implementation — pure functions, DB ops,\n  Line 1216:           is_vector_search_available: () => true,\n  Line 1220:       vectorMod = await import('../lib/search/vector-index-impl');\n  Line 1271:         triggerPhrases: ['vector', 'search'],\n  Line 1280:     it('indexMemory creates additional vector memories for search', () => {\n  Line 1417:     it('vectorSearchEnriched — exported and falls back to keyword search without embedding', async () => {\n  Line 1460:       const result = mod.learnFromSelection('vector search implementation testing', deferredId1!);\n  Line 1463:       // \"vector\", \"search\", \"implementation\" should be added (each >= 4 chars, not stop words)\n  Line 1485:       const result = mod.learnFromSelection('alpha vector search', deferredId1!);\n  Line 1486:       // \"alpha\", \"vector\", \"search\" already exist — no new terms\n\n(Results truncated: showing 100 of 354 matches (254 hidden). Consider using a more specific path or pattern.)","metadata":{"matches":354,"truncated":true},"title":"search.*engine|full.?text.*search|fts5|vector.*search|semantic.*search","time":{"start":1777227925447,"end":1777227925516}}}}
{"type":"tool_use","timestamp":1777227928104,"sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","part":{"id":"prt_dcb0a08d1001EIlqQ5G7aKWIe7","messageID":"msg_dcb09d3d90012zOq5DM299TJWM","sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","type":"tool","tool":"grep","callID":"call_02_0WHz1i9IW66QZ2ZOSxo8kFUY","state":{"status":"completed","input":{"pattern":"memory.?search|cocoindex|trigger.?match","include":"*.md","path":"/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs"},"output":"Found 36376 matches (showing first 100)\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/001-search-scenario-design/scripts/prompts/I3.md:\n  Line 1: Run /memory:search preflight specs/026/003/005 T101.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/scratch/cli-codex-review-2026-04-26.md:\n  Line 19: Evidence: S2 cross-ref is accurate: 001 maps vague search vocabulary to `005/REQ-003` at `.opencode/specs/.../001-search-scenario-design/spec.md:142-147`, and 005/REQ-003 forbids “Auto-triggered memories” at `.opencode/specs/.../005-memory-search-runtime-bugs/spec.md:115`. S1 and S3 have `Cross-ref: None` at `.opencode/specs/.../001-search-scenario-design/spec.md:140` and `.opencode/specs/.../001-search-scenario-design/spec.md:154`; that may be valid, but it means the S-tier is not consistently tied to 005 defect coverage.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/implementation-summary.md:\n  Line 3: title: \"Implementation Summary [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/implementation-summary]\"\n  Line 4: description: \"Findings-only packet — implementation deferred to follow-up remediation packet. Captures bug catalog, root-cause clusters, and reproduction probes for /memory:search runtime defects.\"\n  Line 6:   - \"005-memory-search-runtime-bugs implementation\"\n  Line 7:   - \"memory search runtime findings packet\"\n  Line 12:     packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n  Line 44: | **Spec Folder** | 005-memory-search-runtime-bugs |\n  Line 55: A findings-only spec packet documenting 17 defects in the `/memory:search` command runtime, observed during a live conversation and confirmed via direct MCP probes. Defects are organized into 4 P0 (correctness), 7 P1 (degraded signal), and 6 P2 (refinement) requirements (REQ-001 through REQ-017). The plan groups them into 7 root-cause clusters; tasks decompose each cluster into work units for a follow-up remediation packet.\n  Line 72:   - Added a \"Forbidden Phrase Enforcement\" subsection to the canonical command spec at `.opencode/commands/memory/search.md` §4A Step 4b. The subsection is a literal substitution table covering \"Auto-triggered memories\", \"Triggered memories\", \"Constitutional memories\", and the standalone \"Memories\" header; spells out a mandatory pre-render gate the assistant runs before emitting; and provides a regression-safe `grep -Eci` verification command.\n  Line 116: 1. Read the canonical command spec at `.opencode/commands/memory/search.md` to establish the contract.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/tasks.md:\n  Line 3: title: \"Tasks: /memory:search Runtime Remediation [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/tasks]\"\n  Line 4: description: \"Per-defect work units for /memory:search runtime remediation, organized by root-cause cluster. Findings-packet tasks completed; remediation tasks deferred to follow-up packet.\"\n  Line 6:   - \"memory search remediation tasks\"\n  Line 13:     packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n  Line 28: # Tasks: /memory:search Runtime Remediation\n  Line 91: - [x] T303 Added \"Forbidden Phrase Enforcement (REQ-003 / Cluster 3)\" subsection to `.opencode/commands/memory/search.md` with full forbidden→required substitution table, mandatory pre-render gate steps, and a verification grep\n  Line 101: - [ ] T501 Thread stable sessionId through `/memory:search` invocations within an OpenCode session\n  Line 104: - [ ] T504 Regression test: two consecutive `/memory:search` calls in same session share session ID; second call dedupes prior triggers\n  Line 108: - [ ] T602 [P] Add CocoIndex daemon health check at `/memory:search` invocation start\n  Line 133: - [ ] T906 Verify rendering vocabulary on empty-result `/memory:search` invocation\n  Line 147: - [ ] Memory indexer surfaces this packet via `memory_search \"memory search runtime bugs\"`\n  Line 160: - **Canonical command spec**: `.opencode/commands/memory/search.md`\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/001-search-scenario-design/spec.md:\n  Line 82: - Modifying the canonical command spec at `.opencode/commands/memory/search.md`\n  Line 138: - **Target tools**: `memory_search`, `memory_match_triggers` (trigger phrase \"planner-first\" should hit)\n  Line 152: - **Target tools**: `memory_search` with `intent:find_decision` and `specFolder` filter\n  Line 159: - **Target tools**: `code_graph_query` (structural traversal), fallback to `cocoindex_search` or grep\n  Line 166: - **Target tools**: `memory_context` deep mode + cocoindex hybrid\n  Line 173: - **Target tools**: `cocoindex_search` (semantic), `code_graph_query` (callers), grep (tokens like \"tokenBudget\")\n  Line 186: - **Expected outcome**: Surfaces sibling packet `005-memory-search-runtime-bugs`; recommends starting with spec.md §8 probes\n  Line 192: - **Prompt**: `Run /memory:search preflight specs/026/003/005 T101.`\n  Line 194: - **Target tools**: `/memory:search preflight ...` analysis routing per command spec §5A\n  Line 211: - **1**: Suboptimal tool (works but inefficient, e.g., generic memory_search when memory_search with anchors would be cleaner)\n  Line 212: - **2**: Optimal tool selection per expected behavior; uses CocoIndex/code_graph/memory_search correctly per scenario\n  Line 348: | Tool Selection | 1 | Used grep instead of memory_search (no MCP available) |\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/plan.md:\n  Line 60: - [x] Sibling packet 005-memory-search-runtime-bugs identifies known defects so we can cross-reference\n  Line 171: | Sibling packet 005-memory-search-runtime-bugs | Internal | Green (just landed) | Cross-references work |\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/spec.md:\n  Line 8:   - \"memory search cross-AI test\"\n  Line 53: | **Sibling Phases** | 005-memory-search-runtime-bugs (findings packet for related defects) |\n  Line 74: The system-spec-kit \"Search / Query / Intelligence\" surfaces (memory_search, memory_context, code_graph_query, advisor_recommend, intent classifier, etc.) have grown organically across 26+ optimization packets. Sibling packet `005-memory-search-runtime-bugs` catalogs 17 defects observed in a single live session. We need a reproducible, cross-AI stress-test that quantifies how well the search intelligence performs under realistic prompt variation — not just bug-hunt, but ongoing quality regression.\n  Line 94: - Fixing the 17 defects in sibling packet `005-memory-search-runtime-bugs` (separate remediation packet handles that).\n  Line 142: | REQ-010 | Cross-link to 005 defects | Findings cross-reference REQ IDs from sibling 005-memory-search-runtime-bugs when a scenario surfaces a known defect |\n  Line 163: - **SC-003**: Findings surface at least one actionable insight that was not already known from `005-memory-search-runtime-bugs` (i.e., the playbook adds new signal).\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/002-search-scenario-execution/tasks.md:\n  Line 144: - **Sibling defects packet**: `../../005-memory-search-runtime-bugs/` — cross-reference target\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/001-search-scenario-design/tasks.md:\n  Line 105: - **Sibling defects packet**: `../../005-memory-search-runtime-bugs/`\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/011-mcp-runtime-stress-remediation/001-search-intelligence-stress-playbook/tasks.md:\n  Line 117: - **Sibling packet (defects)**: `../005-memory-search-runtime-bugs/`\n  Line 122: - **Canonical command spec**: `.opencode/commands/memory/search.md`\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/spec.md:\n  Line 3: title: \"Feature Specification [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/spec]\"\n  Line 4: description: \"Findings spec cataloging /memory:search runtime bugs and refinements observed via live conversation + reproduction probes (intent classifier, truncation wrapper, output rendering, causal-stats hygiene).\"\n  Line 6:   - \"005-memory-search-runtime-bugs\"\n  Line 7:   - \"memory search runtime bugs\"\n  Line 19:     packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n  Line 22:     recent_action: \"Authored findings spec from live /memory:search reproduction\"\n  Line 31:       fingerprint: \"sha256:memory-search-runtime-bugs-2026-04-26\"\n  Line 32:       session_id: \"005-memory-search-runtime-bugs-2026-04-26\"\n  Line 42: # Feature Specification: /memory:search Runtime Bugs and Refinements\n  Line 69: A live `/memory:search` session against the indexed-continuity runtime exposed contract violations and degraded UX across the retrieval, output rendering, and causal-graph subcommands. The empty-arguments gate fired correctly, but every downstream stage produced at least one observable defect: the intent classifier emitted `fix_bug` (confidence 0.098) for the query \"Semantic Search\" despite the spec mandating `understand` as the no-keyword-match fallback; the `memory_context` wrapper reported `truncated=true` and zero `results` while consuming only 2% of its 3000-3500 token budget; the assistant rendering used the explicitly-forbidden phrase \"Auto-triggered memories\"; `causal-stats` returned three of six valid relation types and labeled itself `health: \"healthy\"` while reporting `meetsTarget: false`. The root spec at `.opencode/commands/memory/search.md` documents the intended behavior, but the runtime drifts from it on multiple axes.\n  Line 81: - Documenting every observed defect from the conversation transcript and the live reproduction probes against `memory_context`, `memory_search`, and `memory_causal_stats`.\n  Line 82: - Cross-referencing each defect against the canonical spec at `.opencode/commands/memory/search.md` to separate documented contract violations from undocumented gaps.\n  Line 88: - Modifying the `/memory:search` command source file at `.opencode/commands/memory/search.md`.\n  Line 128: | REQ-011 | Session deduplication MUST be effective across calls within a single user session. | Currently each `/memory:search` invocation gets a new ephemeral `effectiveSessionId`, so `enableDedup=true` never engages. After fix, command threads a stable session identifier (e.g., per OpenCode session) or documents the limitation explicitly. |\n  Line 137: | REQ-015 | Trigger and constitutional channels SHOULD participate in dedup. | Currently the same 5 trigger matches resurface across calls in the same conversation; cosmetically redundant. |\n  Line 152: **Given** an empty-results situation with trigger matches, **when** the formatter renders, **then** the heading reads \"Trigger-matched spec-doc records (matched on phrase \\\"<keyword>\\\")\" and never \"Auto-triggered memories\".\n  Line 237: Authoritative sources: `.opencode/commands/memory/search.md` (canonical spec), `.opencode/skills/system-spec-kit/mcp_server/` (runtime), sibling packets `001-cache-warning-hooks` (token-budget patterns), `002-memory-quality-remediation` (prior repair history).\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/plan.md:\n  Line 3: title: \"Implementation Plan: /memory:search Runtime Remediation [system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs/plan]\"\n  Line 4: description: \"Root-cause clusters and remediation strategy for /memory:search runtime bugs catalogued in spec.md. Findings-only packet; this plan briefs the follow-up remediation packet.\"\n  Line 6:   - \"memory search remediation plan\"\n  Line 14:     packet_pointer: \"system-spec-kit/026-graph-and-context-optimization/003-continuity-memory-runtime/005-memory-search-runtime-bugs\"\n  Line 30: # Implementation Plan: /memory:search Runtime Remediation\n  Line 51: `spec.md` catalogs 17 distinct defects across 4 P0, 7 P1, and 6 P2 buckets observed in `/memory:search`. Many share underlying root causes; this plan groups them into 7 clusters so a follow-up remediation packet can address each cluster independently and re-verify against the same probes captured in spec §8. This packet itself is findings-only — implementation is deferred.\n  Line 69: - [ ] Memory indexer surfaces this packet via `memory_search`\n  Line 104: `/memory:search \"<query>\"` → command harness parses args → routes to `memory_context` (retrieval mode) or analysis subcommand → wrapper assembles response with `meta` + `data` + `hints` → renderer formats output block → assistant emits to user. Defects span every stage of this pipeline; clusters above map to specific stages.\n  Line 142: | Integration | End-to-end `/memory:search` invocations against fixture queries | Vitest + MCP server harness |\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/000-release-cleanup/001-memory-terminology/review/iterations/iteration-005.md:\n  Line 11: | REQ-001 identifier preservation | Precise `tool-schemas.ts` `name: 'memory_*'` count = 21. Handler files matching `mcp_server/handlers/memory-*.ts` = 17. Unique slash-command mentions across OpenCode, Claude, and Gemini mirrors = 4 (`/memory:save`, `/memory:search`, `/memory:learn`, `/memory:manage`). Each runtime command folder has 4 command files. `_memory:` remains in `spec.md:15`. `references/memory/` and `scripts/dist/memory/` are present. `working_memory` remains present in the cognitive subsystem. | PASS |\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/000-release-cleanup/001-memory-terminology/review/iterations/iteration-003.md:\n  Line 12: - `mcp_server/tool-schemas.ts` still declares 21 `memory_*` MCP tool names: `memory_context`, `memory_search`, `memory_quick_search`, `memory_match_triggers`, `memory_save`, `memory_list`, `memory_stats`, `memory_health`, `memory_delete`, `memory_update`, `memory_validate`, `memory_bulk_delete`, `memory_drift_why`, `memory_causal_link`, `memory_causal_stats`, `memory_causal_unlink`, `memory_index_scan`, `memory_get_learning_history`, `memory_ingest_start`, `memory_ingest_status`, `memory_ingest_cancel`.\n  Line 14: - `/memory:save`, `/memory:search`, `/memory:learn`, and `/memory:manage` command files remain present across OpenCode, Claude, and Gemini mirrors.\n  Line 23: - `mcp_server/tool-schemas.ts:47-54` keeps tool names frozen while `memory_context` / `memory_search` descriptions point to spec-doc continuity retrieval and indexed spec-doc records.\n  Line 107: - `feature_catalog/feature_catalog.md:171-179` still references correct MCP tool names (`memory_context`, `memory_quick_search`, `memory_search`, `memory_save`, and related tools).\n  Line 117: - `manual_testing_playbook/13--memory-quality-and-indexing/003-context-save-index-update.md:32-44` still validates generated context artifacts through `memory_search` / `memory_context` and tier-invariant spot checks.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/000-release-cleanup/001-memory-terminology/review/iterations/iteration-001.md:\n  Line 24: Identifier rename audit passed: all 21 no-touch `memory_*` tool names are present in `tool-schemas.ts`, `/memory:save`, `/memory:search`, `/memory:learn`, and `/memory:manage` remain present in command docs, `_memory:` remains at `spec.md:15`, handler filename count is 17, `references/memory/` and `scripts/dist/memory/` exist, and SQL table names including `working_memory` remain present.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/000-release-cleanup/001-memory-terminology/review/prompts/iteration-001.md:\n  Line 20:    - 21 `memory_*` MCP tools: memory_context, memory_search, memory_quick_search, memory_match_triggers, memory_save, memory_update, memory_delete, memory_list, memory_index_scan, memory_validate, memory_health, memory_stats, memory_bulk_delete, memory_get_learning_history, memory_drift_why, memory_causal_link, memory_causal_unlink, memory_causal_stats, memory_ingest_start, memory_ingest_status, memory_ingest_cancel\n  Line 21:    - 4 slash commands: /memory:save, /memory:search, /memory:learn, /memory:manage\n  Line 50:    grep -rn 'memory_search\\|memory_save\\|memory_context\\|memory_match_triggers' .opencode/skills/system-spec-kit/mcp_server/tool-schemas.ts | wc -l\n  Line 52:    grep -rn '/memory:save\\|/memory:search\\|/memory:learn\\|/memory:manage' .opencode/commands/memory/\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/skilled-agent-orchestration/048-cli-testing-playbooks/review/iterations/iteration-002.md:\n  Line 111: CO-021 line 34 PASS depends on opencode memory_search, not Codex execution.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/000-release-cleanup/001-memory-terminology/review/deep-review-strategy.md:\n  Line 74: - 21 MCP tool names: `memory_context`, `memory_search`, `memory_quick_search`, `memory_match_triggers`, `memory_save`, `memory_update`, `memory_delete`, `memory_list`, `memory_index_scan`, `memory_validate`, `memory_health`, `memory_stats`, `memory_bulk_delete`, `memory_get_learning_history`, `memory_drift_why`, `memory_causal_link`, `memory_causal_unlink`, `memory_causal_stats`, `memory_ingest_start`, `memory_ingest_status`, `memory_ingest_cancel`\n  Line 75: - 4 slash commands: `/memory:save`, `/memory:search`, `/memory:learn`, `/memory:manage`\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/skilled-agent-orchestration/049-mcp-testing-playbooks/implementation-summary.md:\n  Line 93: | **CCC-001** | Project initialization (existing playbook) | ✅ **PASS** (status surrogate) | `ccc status` exit 0; output includes `Project: ...`, `Settings: .../.cocoindex_code/settings.yml`, index stats `1,169,038 chunks`, `95,374 files`, multi-language coverage. Project was already initialized; status query is the safe equivalent of CCC-001 init for an existing project. |\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/skilled-agent-orchestration/049-mcp-testing-playbooks/research.md:\n  Line 254: | Daemon socket health (`~/.cocoindex_code/daemon.sock`) | Partially via DMN-002 (daemon.pid + daemon.sock files exist) | Adequate |\n  Line 255: | Daemon log inspection (`~/.cocoindex_code/daemon.log`) | NO explicit scenario | Minor; covered by Recovery section in SKILL.md |\n  Line 281: | Daemon socket health (`~/.cocoindex_code/daemon.sock`) | YES — DMN-002 explicitly checks `ls ~/.cocoindex_code/daemon.pid ~/.cocoindex_code/daemon.sock` for both files | no action |\n  Line 282: | Daemon log inspection (`~/.cocoindex_code/daemon.log`) | PARTIAL — referenced in MCP-007 + DMN-002 failure-triage steps; no first-class scenario, but covered as recovery aid in adjacent scenarios | no action — adequate via failure-triage references |\n  Line 294: 3. **DMN-003** (Helper-script readiness) — fills the SKILL.md §4 ALWAYS rule #7 mandate by exercising both `doctor.sh` and `ensure_ready.sh` on positive (healthy project) and negative (`--require-config` against a directory without `.cocoindex_code/`) paths plus idempotency.\n\n/Users/michelkerkmeester/MEGA/Development/Code_Environment/Public/.opencode/specs/system-spec-kit/026-graph-and-context-optimization/000-release-cleanup/001-memory-terminology/phrasing-audit.md:\n  Line 118: | `context.md`, `deep-research.md`, `deep-review.md`, `orchestrate.md`, `review.md` | Each agent definition references `memory_context()` / `memory_search()` / `memory_match_triggers()` in workflow prose (\"Do NOT redundantly call \\`memory_context\\` …\"). Tool names stay verbatim (REQ-001). Surrounding prose (\"memory operations\" / \"your memory\" / \"the memory system\") gets the standard rewrite. | Apply vocabulary-key replacements to surrounding prose; leave backtick-quoted tool names alone. |\n  Line 122: The playbook scenarios script tool calls (e.g., \"run `memory_search('semantic search')`\"). Tool calls stay literal. Prose around them (\"Verify that recent memories are returned\") gets re-phrased per vocabulary key. ~62 occurrences, mostly mechanical.\n  Line 133: | `memory_search` (`:55`) | `[L2:Core] Search conversation memories semantically using vector similarity. Returns ranked results with similarity scores. Constitutional tier memories are ALWAYS included at the top of results (~2000 tokens max), regardless of query. […]` | `[L2:Core] Search the indexed spec-doc continuity store semantically using vector similarity. Returns ranked records (one record = one indexed spec-doc surface) with similarity scores. Constitutional tier rules are ALWAYS included at the top of results (~2000 tokens max), regardless of query. […]` |\n  Line 134: | `memory_search` `sessionId` param (`:81`) | `Session identifier for working memory and session deduplication (REQ-001). When provided with enableDedup=true, prevents duplicate memories from being returned in the same session (~50% token savings on follow-up queries).` | `Session identifier for working-memory cache and session deduplication (REQ-001). When provided with enableDedup=true, prevents duplicate spec-doc records from being returned in the same session (~50% token savings on follow-up queries).` |\n  Line 135: | `memory_search` `enableDedup` param (`:86`) | `Enable session deduplication (REQ-001). When true and sessionId provided, filters out already-sent memories.` | `Enable session deduplication (REQ-001). When true and sessionId provided, filters out already-sent spec-doc records.` |\n  Line 136: | `memory_search` `includeContiguity` param (`:91`) | `Include adjacent/contiguous memories in results` | `Include adjacent/contiguous spec-doc records in results (records from the same packet, neighboring sections)` |\n  Line 137: | `memory_search` `includeConstitutional` param (`:95`) | `Include constitutional tier memories at top of results (default: true)` | `Include constitutional tier rules at top of results (default: true)` |\n\n(Results truncated: showing 100 of 36376 matches (36276 hidden). Consider using a more specific path or pattern.)","metadata":{"matches":36376,"truncated":true},"title":"memory.?search|cocoindex|trigger.?match","time":{"start":1777227927871,"end":1777227928103}}}}
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{"type":"step_start","timestamp":1777227940127,"sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","part":{"id":"prt_dcb0a411b0010mAL7vkOuU6CN3","messageID":"msg_dcb0a3356002y2GEIA4JOrajjm","sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","snapshot":"f390e72287d16cfefee20ae2a1af7816262eab87","type":"step-start"}}
{"type":"text","timestamp":1777227957092,"sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","part":{"id":"prt_dcb0a441b001NF3ru8Lp0tykKY","messageID":"msg_dcb0a3356002y2GEIA4JOrajjm","sessionID":"ses_234f62e94ffeaLXw1Y5BeWEp0g","type":"text","text":"## Search System — Concise Overview\n\n### 3 Independent Search Surfaces\n\n**1. Memory Search (`memory_search` / `/memory:search`)**\n- **Code**: `mcp_server/lib/search/` — ~70 TypeScript modules\n- **Pipeline**: 5-stage hybrid retrieval: Candidate Gen → Fusion → Rerank → Filter → Enrichment\n  - *Pipeline dir*: `lib/search/pipeline/orchestrator.ts`, `stage1-candidate-gen.ts`, `stage2-fusion.ts`, `stage3-rerank.ts`, `stage4-filter.ts`\n- **Channels**: Vector (embeddings), BM25/`sqlite-fts.ts`, Graph (`graph-search-fn.ts`), Trigger (`chunk-reassembly.ts`)\n- **Intel layer**: Intent classifier (`intent-classifier.ts`), query expansion (`query-expander.ts`), HyDE (`hyde.ts`), cross-encoder (`cross-encoder.ts`), reranker (`reranker.ts`), progressive disclosure, token budgeting\n- **Canonical spec**: `.opencode/commands/memory/search.md`\n- **Bug catalog**: `specs/.../005-memory-search-runtime-bugs/` — 17 defects (4 P0, 7 P1, 6 P2)\n\n**2. Semantic Code Search (`cocoindex_code_search`)**\n- **Backend**: CocoIndex — vector embeddings over 95K+ files, 1.2M+ chunks\n- **MCP tool**: `cocoindex_code_search({ query, limit, languages, paths })`\n- **Trigger phrases**: \"find code that does X\", \"how is X implemented\", concept/intent-based queries\n- **Status**: `spec_kit_memory_ccc_status()` for daemon health\n\n**3. Structural Code Graph (`code_graph_query`)**\n- **Operations**: `outline`, `calls_from`/`calls_to`, `imports_from`/`imports_to`, `blast_radius`\n- **Status**: 1,472 files, 33,340 nodes, 17,214 edges (fresh)\n\n### Key Spec Packets\n- `022-hybrid-rag-fusion/` — Epic: hybrid retrieval architecture (RAG fusion, scoring, calibration)\n- `026-graph-and-context-optimization/003/` — Continuity memory runtime: search bugs, stress test, remedial work\n- `009-perfect-session-capturing/` — Embedding quality, contamination detection, quality scorer unification\n\n### Routing Decision Tree (from `AGENTS.md`)\n```\nExact text? → Grep | Exact file? → Glob | Concept/intent? → CocoIndex | Structural (callers/imports)? → code_graph_query | Spec-doc retrieval? → memory_search\n```","time":{"start":1777227957087,"end":1777227957087}}}
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