# API & CLI Reference

**Version**: v1.2.7 | **Status**: Active | **Last Updated**: March 2026

## Overview

Comprehensive reference documentation for APIs, CLI tools, configuration, performance benchmarks, and migration guides.

## Contents

| Document | Description |
|:---|:---|
| [api-complete.md](api-complete.md) | Complete API specification with all modules |
| [api.md](api.md) | Core API reference with endpoint documentation |
| [changelog.md](changelog.md) | Version history and release notes |
| [cli.md](cli.md) | CLI tools reference for all command-line utilities |
| [glossary.md](glossary.md) | Terminology glossary for Codomyrmex concepts |
| [inventory.md](inventory.md) | Authoritative repo metrics (modules, MCP tools, tests) and how to reproduce them |
| [mcp-tool-spec-coverage.md](mcp-tool-spec-coverage.md) | `MCP_TOOL_SPECIFICATION.md` sibling coverage for `mcp_tools.py`; run `scripts/mcp_spec_gap.py` |
| [migration-guide.md](migration-guide.md) | Guide for migrating between major versions |
| [orchestrator.md](orchestrator.md) | Orchestrator API and workflow engine reference |
| [performance-benchmarks.md](performance-benchmarks.md) | Benchmark results and methodology |
| [performance-optimization.md](performance-optimization.md) | Optimization techniques and tuning |
| [performance.md](performance.md) | Performance characteristics and profiling |
| [security.md](security.md) | Security API reference and vulnerability management |
| [troubleshooting.md](troubleshooting.md) | Common issues, error codes, and resolution guides |

## Coordination

- [AGENTS.md](AGENTS.md) — Agent coordination for this section
- [SPEC.md](SPEC.md) — Functional specification
- [PAI.md](PAI.md) — PAI infrastructure integration

## Navigation

- **Parent**: [docs/](../README.md)
- **Project Root**: [README.md](../../README.md)
