# Documentation Audit Report — 2026-03-04

> Generated by: Repo-wide documentation and AGENTS.md audit (ln-610 workflow)

## Overall Health

| Doc Type | Coverage | Status |
|----------|----------|--------|
| README.md | 126/126 (100%) | ✅ Complete |
| PAI.md | 126/126 (100%) | ✅ Complete |
| AGENTS.md | 127 top-level | ✅ Complete |
| API_SPECIFICATION.md | 91/126 (72%) | ⚠️ 35 missing |
| MCP_TOOL_SPECIFICATION.md | ~50% of mcp_tools.py modules | ⚠️ ~60 missing |
| PAI Agent Role Access Matrix (in AGENTS.md) | 103/127 (81%) → 127/127 after fix | ✅ Fixed 2026-03-04 |
| docs/modules/ directories | 121/126 (96%) → 126/126 after fix | ✅ Fixed 2026-03-04 |

## Fixed This Session (2026-03-04)

- [x] Added `react_step` to agents/core tools in MEMORY.md (was undocumented)
- [x] Verified `agentmail_create_webhook` already documented in email MCP spec
- [x] Added PAI Agent Role Access Matrix to 24 AGENTS.md files missing it
- [x] Created docs/modules/ stubs for 5 missing modules: config_audits, config_monitoring, demos, ml_pipeline, soul

## Known Gaps (Tracked)

### API_SPECIFICATION.md Missing (35 modules)

**ML/Training pipeline** (15):
autograd, distillation, distributed_training, dpo, eval_harness, lora, matmul_kernel, model_merger, nas, peft, quantization, rlhf, softmax_opt, text_to_sql, tokenizer

**Specialized domains** (12):
ai_gateway, data_curation, file_system, image, interpretability, logit_processor, multimodal, neural, operating_system, semantic_router, slm, synthetic_data

**Configuration & Operations** (4):
config_audits, config_monitoring, container_optimization, cost_management

**Other** (4):
demos, feature_store, ml_pipeline, dark

**Priority for next audit**: ai_gateway, file_system, image, neural (highest-value missing)

### MCP_TOOL_SPECIFICATION.md Coverage Gap (~60 modules)

Approximately 60 modules have `mcp_tools.py` but lack a corresponding `MCP_TOOL_SPECIFICATION.md`. These were added in sprint waves (Sprint 17–22) faster than specs were written.

**Action**: Generate specs from `@mcp_tool` function signatures. Template: `src/codomyrmex/soul/MCP_TOOL_SPECIFICATION.md`.

## Verification Commands

```bash
# Count AGENTS.md files with PAI matrix
grep -rl "PAI Agent Role Access Matrix" src/codomyrmex/*/AGENTS.md | wc -l

# Find mcp_tools.py without MCP_TOOL_SPECIFICATION.md
for f in $(find src/codomyrmex -name mcp_tools.py); do
  dir=$(dirname $f)
  if [ ! -f "$dir/MCP_TOOL_SPECIFICATION.md" ]; then echo "$dir"; fi
done

# Count docs/modules directories
ls docs/modules/ | wc -l
```

## Next Audit Recommended

- After creating 35 API_SPECIFICATION.md stubs (P3 work)
- After MCP_TOOL_SPECIFICATION.md coverage push
- Target date: next sprint
