# BWA

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.1`
**Version**: 0.1
**Category**: Mapping

> - map short reads (< 100 bp) against reference genome

## Example Query

> "Run BWA on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.1
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.1 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
