# Trimmomatic

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1`
**Version**: 0.38.1
**Category**: FASTQ Quality Control

> flexible read trimming tool for Illumina NGS data

## Example Query

> "Run Trimmomatic on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
