# Align sequences

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.4+galaxy0`
**Version**: 0.20.4+galaxy0
**Category**: Mapping

> to a reference using a codon alignment algorithm

## Example Query

> "Run Align sequences on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.4+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.4+galaxy0 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
