# Samtools mpileup

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.6`
**Version**: 2.1.6
**Category**: SAM/BAM

> multi-way pileup of variants

## Example Query

> "Run Samtools mpileup on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.6
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.6 --input <file> --output <dir>
```

---
*Auto-generated from usegalaxy.org tool index*
