# bamCompare

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/2.3.5.0`
**Version**: 2.3.5.0
**Category**: deepTools

> normalizes and compares two BAM files to obtain the ratio, log2ratio or difference between them

## Example Query

> "Run bamCompare on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/2.3.5.0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/2.3.5.0 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
