# PretextMap

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.8+galaxy2`
**Version**: 0.1.8+galaxy2
**Category**: Assembly

> converts SAM or BAM files into genome contact maps

## Example Query

> "Run PretextMap on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.8+galaxy2
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.8+galaxy2 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
