# CAT summarise

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/cat_summarise/cat_summarise/5.2.3+galaxy0`
**Version**: 5.2.3+galaxy0
**Category**: Metagenomic Analysis

> the number of contigs or bins assigned to each taxonomic name

## Example Query

> "Run CAT summarise on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/cat_summarise/cat_summarise/5.2.3+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/cat_summarise/cat_summarise/5.2.3+galaxy0 --input <file> --output <dir>
```

---
*Auto-generated from usegalaxy.org tool index*
