# MiRDeep2

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2/rbc_mirdeep2/2.0.1.2+galaxy0`
**Version**: 2.0.1.2+galaxy0
**Category**: RNA-seq

> identification of novel and known miRNAs

## Example Query

> "Run MiRDeep2 on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2/rbc_mirdeep2/2.0.1.2+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2/rbc_mirdeep2/2.0.1.2+galaxy0 --input <file> --output <dir>
```

---
*Auto-generated from usegalaxy.org tool index*
