# Trinotate

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.2+galaxy0`
**Version**: 3.2.2+galaxy0
**Category**: RNA-seq

> functional transcript annotation

## Example Query

> "Run Trinotate on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.2+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.2+galaxy0 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
