# Samtools fastx

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.13`
**Version**: 1.13
**Category**: SAM/BAM

> extract FASTA or FASTQ from alignment files

## Example Query

> "Run Samtools fastx on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.13
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.13 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
