# Samtools flagstat

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.4`
**Version**: 2.0.4
**Category**: SAM/BAM

> tabulate descriptive stats for BAM datset

## Example Query

> "Run Samtools flagstat on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.4
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.4 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
