# bcftools cnv

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.10+galaxy1`
**Version**: 1.10+galaxy1
**Category**: VCF/BCF

> Call copy number variation from VCF B-allele frequency (BAF) and Log R Ratio intensity (LRR) values

## Example Query

> "Run bcftools cnv on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.10+galaxy1
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.10+galaxy1 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
