# Salmon quant

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/1.9.0+galaxy2`
**Version**: 1.9.0+galaxy2
**Category**: RNA-seq

> Perform dual-phase, reads or mapping-based estimation of transcript abundance from RNA-seq reads

## Example Query

> "Run Salmon quant on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/1.9.0+galaxy2
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/1.9.0+galaxy2 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
