# Bracken

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/bracken/est_abundance/2.9+galaxy0`
**Version**: 2.9+galaxy0
**Category**: Metagenomic Analysis

> to re-estimate abundance at a taxonomic level from kraken output

**EDAM Topics**: topic_3174, topic_3697

**EDAM Operations**: operation_2238

## Example Query

> "Run Bracken on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/bracken/est_abundance/2.9+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/bracken/est_abundance/2.9+galaxy0 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
