# BWA-MEM2

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0`
**Version**: 2.2.1+galaxy0
**Category**: Mapping

> - map medium and long reads (> 100 bp) against reference genome

## Example Query

> "Run BWA-MEM2 on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0 --input <file> --output <dir>
```

---
*Auto-generated from usegalaxy.org tool index*
