# SegAlign

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/richard-burhans/segalign/segalign/0.1.2.1+galaxy0`
**Version**: 0.1.2.1+galaxy0
**Category**: Mapping

> A Scalable GPU System for Pairwise Whole Genome Alignments based on LASTZ's seed-filter-extend paradigm

**EDAM Operations**: operation_0491

## Example Query

> "Run SegAlign on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/richard-burhans/segalign/segalign/0.1.2.1+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/richard-burhans/segalign/segalign/0.1.2.1+galaxy0 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
