# MiRDeep2 Mapper

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0.8.1`
**Version**: 2.0.0.8.1
**Category**: RNA-seq

> process and map reads to a reference genome

## Example Query

> "Run MiRDeep2 Mapper on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0.8.1
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0.8.1 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
