# Samtools view

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.13+galaxy1`
**Version**: 1.13+galaxy1
**Category**: SAM/BAM

> - reformat, filter, or subsample SAM, BAM or CRAM

## Example Query

> "Run Samtools view on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.13+galaxy1
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.13+galaxy1 --input <file> --output <dir>
```

---
*Auto-generated from usegalaxy.org tool index*
