# Cutadapt

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.5+galaxy1`
**Version**: 3.5+galaxy1
**Category**: FASTA/FASTQ

> Remove adapter sequences from FASTQ/FASTA

**EDAM Topics**: topic_0632

**EDAM Operations**: operation_0231

## Example Query

> "Run Cutadapt on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.5+galaxy1
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.5+galaxy1 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
