# Map with minimap2

**Galaxy Tool ID**: `toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.23+galaxy0`
**Version**: 2.23+galaxy0
**Category**: Mapping

> A fast pairwise aligner for genomic and spliced nucleotide sequences

**EDAM Topics**: topic_0102

**EDAM Operations**: operation_0292

## Example Query

> "Run Map with minimap2 on my data"

## Run via Galaxy Bridge

```bash
python galaxy_bridge.py --tool-details toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.23+galaxy0
python galaxy_bridge.py --run toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.23+galaxy0 --input <file> --output <dir>
```

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*Auto-generated from usegalaxy.org tool index*
