---
stable_id: skills/knowledge-work-plugins-bio-research-skills-nextflow-development-skill
type: skills
title: nextflow-development
summary: Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on
  sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either
  local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow,
  FASTQ analysis, variant calling, gene expression, differential expression, GEO
  reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.
tags:
  - source-knowledge-work-plugins
  - plugin-bio-research
  - plugin-component-skills
  - plugin-skill
  - category-search-research
source_url: https://raw.githubusercontent.com/anthropics/knowledge-work-plugins/main/bio-research/skills/nextflow-development/SKILL.md
license: ""
upstream_ref: https://github.com/anthropics/knowledge-work-plugins/blob/main/bio-research/skills/nextflow-development/SKILL.md
github_stars: null
github_forks: null
github_is_organization: null
retrieved_at: 2026-06-11T08:31:57.989Z
content_sha256: f30017df5d499427a701ec6cedfc5c9948ca3bd04ee1a2b6a585a29cd93ad0d7
---
