---
stable_id: skills/knowledge-work-plugins-bio-research-skills-single-cell-rna-qc-skill
type: skills
title: single-cell-rna-qc
summary: Performs quality control on single-cell RNA-seq data (.h5ad or .h5
  files) using scverse best practices with MAD-based filtering and comprehensive
  visualizations. Use when users request QC analysis, filtering low-quality
  cells, assessing data quality, or following scverse/scanpy best practices for
  single-cell analysis.
tags:
  - source-knowledge-work-plugins
  - plugin-bio-research
  - plugin-component-skills
  - plugin-skill
  - category-search-research
source_url: https://raw.githubusercontent.com/anthropics/knowledge-work-plugins/main/bio-research/skills/single-cell-rna-qc/SKILL.md
license: ""
upstream_ref: https://github.com/anthropics/knowledge-work-plugins/blob/main/bio-research/skills/single-cell-rna-qc/SKILL.md
github_stars: null
github_forks: null
github_is_organization: null
retrieved_at: 2026-06-11T08:31:58.082Z
content_sha256: 49cb573916deec6fcf6cc2cb1b573469cbc8c34b84326597ce2db22d0202393f
---
