# Proto-OKN Knowledge Graph Session

👤 **User**
List the available KGs

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🧠 **Assistant**

There are **33 knowledge graphs** available in the Proto-OKN network. Here's a summary organized by domain:

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### 🧪 Toxicology & Chemistry
| Name | Description |
|---|---|
| **biobricks-aopwiki** | Adverse Outcome Pathways linking molecular events to health outcomes (493 AOPs) |
| **biobricks-ice** | EPA NICEATM bioassay data — 206K chemicals, 3M+ measurements |
| **biobricks-pubchem-annotations** | 10.7M chemical annotations from PubChem |
| **biobricks-tox21** | Tox21 qHTS 10K library — ~10K chemicals across 70+ assays |
| **biobricks-toxcast** | EPA ToxCast — 9,542 chemicals, 2,205 assay endpoints |

### 🧬 Biomedical & Genomics
| Name | Description |
|---|---|
| **biohealth** | Biomedical + Social Determinants of Health; 110M+ triples, integrates PubMed & EHRs |
| **biomarkerkg** | Biomarker-disease-phenotype associations with statistical evidence |
| **gene-expression-atlas-okn** | EMBL-EBI gene expression data — 243 studies, 797 assays, 152K genes |
| **ncipidkg** | NCI Pathway Interaction Database — cancer signaling & regulatory pathways |
| **pankgraph** | PanKbase pancreas/diabetes KG — genes, SNPs, eQTLs, regulatory genomics |
| **prokn** | Protein Knowledge Network — PTMs, variants, pathways, drug targets |
| **spoke-genelab** | NASA GeneLab spaceflight omics data integrated with SPOKE |
| **spoke-okn** | SPOKE — comprehensive biomedical KG (genes, diseases, drugs, locations, environment) |

### 🏥 Health & Clinical
| Name | Description |
|---|---|
| **biobricks-mesh** | Complete NLM MeSH vocabulary — 2.4M biomedical entities |
| **nde** | NIAID Data Ecosystem — metadata for infectious/immune disease datasets |
| **oard-kg** | Rare disease–phenotype associations from EHR data |
| **ruralkg** | Rural health: substance abuse, criminal justice, mental health services |

### 🌍 Environment & Geospatial
| Name | Description |
|---|---|
| **climatemodelskg** | Climate models, experiments, institutes, and geographic coverage (CMIP6) |
| **fiokg** | EPA Facility Registry — 826K+ regulated facilities, NAICS industries, PFAS |
| **geoconnex** | US hydrologic features — 1.6M monitoring sites, dams, watersheds |
| **hydrologykg** | SAWGraph hydrology — NHDPlus surface/groundwater, PFAS tracing |
| **nasa-gesdisc-kg** | NASA GES DISC datasets, instruments, platforms, science keywords |
| **sawgraph** | PFAS contamination in food and water systems (WQP + state data) |
| **sockg** | Soil Organic Carbon — agricultural practices, SOC measurements |
| **spatialkg** | US geospatial KG — 16.8M entities, S2 cells, admin boundaries (48 states) |
| **ufokn** | Urban Flooding — infrastructure linked to NOAA flood forecasts |
| **wildlifekn** | Wildlife species, habitats, biodiversity, climate change |

### ⚖️ Criminal Justice & Social
| Name | Description |
|---|---|
| **dreamkg** | Homelessness social services — 87 organizations, service offerings |
| **nikg** | Neighborhood incident data (Philadelphia), crime, census tracts |
| **scales** | 523M+ triples, 4.1M court cases (criminal & civil), attorneys, judges |

### 🏭 Industry & Infrastructure
| Name | Description |
|---|---|
| **securechainkg** | Software supply chain — 803K packages, 259K vulnerabilities (CVEs) |
| **sudokn** | US manufacturing capabilities — SMMs, process/material/cert data |

### 🧫 Specialized Science
| Name | Description |
|---|---|
| **evoweb** | Co-evolving genes and protein functional relationships (EvoWeaver) |

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👤 **User**
Create a chat transcript

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🧠 **Assistant**

Created this chat transcript and saved it as a downloadable markdown file.

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*Created by [mcp-proto-okn](https://github.com/sbl-sdsc/mcp-proto-okn) 0.6.0 on 2026-05-01*

*Model: claude-sonnet-4-6*
