{
  "id": "scientific/scanpy",
  "version": "1.0.0",
  "name": "scanpy",
  "description": "Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.",
  "domain": "scientific",
  "source": "external",
  "tools": [],
  "exitStates": [
    "success",
    "failure"
  ],
  "inputSchema": {},
  "outputSchema": {},
  "temperature": 0,
  "tags": [
    "scientific",
    "imported",
    "community"
  ],
  "platforms": {
    "claude": {
      "license": "SD-3-Clause license",
      "triggers": [
        "help with scanpy",
        "data analysis",
        "visualization"
      ]
    },
    "cursor": {},
    "skeneflow": {}
  }
}
