---
title: Operon DNA Repair
emoji: "\U0001F9EC"
colorFrom: green
colorTo: blue
sdk: gradio
sdk_version: "6.5.1"
app_file: app.py
pinned: false
license: mit
short_description: Genome integrity and corruption repair
---

# Operon DNA Repair

Checkpoint genome state, inject corruptions, scan for damage, repair mutations, and verify integrity certificates -- like cellular DNA damage response powering genomic stability.

## What to Try

1. **Checkpoint & Scan** -- Initialize a genome, take a checkpoint, inject a corruption (temperature drift, silenced gene, expression change, or extra gene), and scan for damage with color-coded severity badges.
2. **Repair & Certify** -- Run the full pipeline end-to-end: checkpoint, corrupt, scan, repair, re-scan, and certify. Select from preset scenarios like "Temperature drift", "Required gene silenced", or "Multiple corruptions".
3. **Repair Memory** -- Inspect the HistoneStore markers generated during repair operations. Filter by tag to see how the system records repair lessons as epigenetic memory.

## How It Works

The DNARepair system detects four types of corruption (genome drift, expression drift, memory corruption, checksum failure) and applies targeted repair strategies (rollback, re-express, epigenetic patch, checkpoint restore). Successful repairs are stored as histone markers for future reference, and integrity certificates verify the genome matches its checkpoint.

## Learn More

[GitHub](https://github.com/coredipper/operon) | [PyPI](https://pypi.org/project/operon-ai/) | [Paper](https://github.com/coredipper/operon/tree/main/article)
